Plant FIBer expression Database

Pt-ORC2.1 (Potri.003G094800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ORC2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37560 537 / 0 ATORC2 origin recognition complex second largest subunit 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025330
[exp]
529 / 0 AT2G37560 485 / 3e-172 origin recognition complex second largest subunit 2 (.1.2)
Lus10024412
[exp]
503 / 7e-180 AT2G37560 462 / 3e-164 origin recognition complex second largest subunit 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04084 ORC2 Origin recognition complex subunit 2
Representative CDS sequence
>Potri.003G094800.1 pacid=42784524 polypeptide=Potri.003G094800.1.p locus=Potri.003G094800 ID=Potri.003G094800.1.v4.1 annot-version=v4.1
ATGGAAATCAATGATGGAGAAGAAGAGGAATTTGAGTTCTCAAGGAATTACTTTCTAGCAAAAGAATTAGCTGGGTCGGGTAAGAAATCAACCCGCAAGA
TTTCTGATATCAACGTCGTCGATGAACAGGAGCTAAGAGCGGCAGCAGCTAATATTGAGCTAAAACATGAGAAAGAGATTAATTCTCTTGTTAATAGTTA
TAAGAGCTTGTATCCTAAATGGGTTTTTGAACTCAGGTGTGGATTTGGCCTTCTAATGTATGGTTTTGGATCGAAGAAGGTACTGATTGAAGATTTTGCT
TCTACAGCATTAACCGAGTATTCTGTAGTAGTCATCAATGGGTATCTTCAGTCAATTAATCTAAAACAGGTGGTCATTGCTTTAGCTGAAATTTGGTGGG
AAGAGTTGAAAACCAAACGAAGGACTTCTTCAGGGGTTTCATCTAAATTTCAACAGCCTTTTAATTCTCAATCTATGGATGACCTTCTTGCATTTTTGCA
TGAATCAGACGTGGAGGAAAATGATTCTTTTGTGTGCATTGTTGTTCACAATATTGACGGGCCTGGATTGAGAGACTCTGAAAGTCAACAGTATCTTGCG
CGACTTGCTTCTTGTTCACATATCCGCATTGTTGCCTCTATTGACAATGTTAATGCACCTCTTTTGTGGGATAAGAAGATGGTTCACACCCAGTTTAATT
GGTTCTGGTATCATGTTCCTACCTTTGCACCTTATAATGTTGAAGGAATCTTTTTTCCTTTGATTCTCGCTCACAGCAGTACAGCTCAAAGTGCCAAAAC
AGCTGCAATAGTCTTACAGAGTCTGACACCCAATGCCCAAAGTGTGTTCAAAATTCTTGCAGAATATCAGTTGTCTCATCCTGATGAAGAAGGCATGCCA
GTTGATGCTCTGTATACAACTGCTCGAGAGCGCTTCCTTGTGAGCAGCCAGGTCACATTAAACTCTCATTTGACAGAATTCAAAGATCATGAGTTAGTAA
AGACTAGACGGCACAGTGATGGCCAAGACTGCTTGCACATCCCGCTTGCAGCGGATGCCCTTGAAAAGTTGCTTTCTGAGATCAATCAATAG
AA sequence
>Potri.003G094800.1 pacid=42784524 polypeptide=Potri.003G094800.1.p locus=Potri.003G094800 ID=Potri.003G094800.1.v4.1 annot-version=v4.1
MEINDGEEEEFEFSRNYFLAKELAGSGKKSTRKISDINVVDEQELRAAAANIELKHEKEINSLVNSYKSLYPKWVFELRCGFGLLMYGFGSKKVLIEDFA
STALTEYSVVVINGYLQSINLKQVVIALAEIWWEELKTKRRTSSGVSSKFQQPFNSQSMDDLLAFLHESDVEENDSFVCIVVHNIDGPGLRDSESQQYLA
RLASCSHIRIVASIDNVNAPLLWDKKMVHTQFNWFWYHVPTFAPYNVEGIFFPLILAHSSTAQSAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMP
VDALYTTARERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCLHIPLAADALEKLLSEINQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37560 ATORC2 origin recognition complex sec... Potri.003G094800
[exp]
0 1 Pt-ORC2.1
AT1G21690 RFC4, EMB1968 replication factor C 4, embryo... Potri.005G181300
[exp]
2.00 0.7818
AT5G16870 Peptidyl-tRNA hydrolase II (PT... Potri.019G050100
[exp]
2.44 0.7732
AT5G05920 DHS, EDA22 embryo sac development arrest ... Potri.003G186900
[exp]
2.44 0.7841
AT5G56130 THO3, AtTEX1 Transducin/WD40 repeat-like su... Potri.001G470900
[exp]
6.00 0.7369
AT1G79950 RAD3-like DNA-binding helicase... Potri.001G180200
[exp]
12.80 0.7596
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
15.29 0.7270
AT3G02820 zinc knuckle (CCHC-type) famil... Potri.010G097400
[exp]
21.16 0.6821
AT5G08260 SCPL35 serine carboxypeptidase-like 3... Potri.007G072300
[exp]
31.93 0.6807
AT5G64630 MUB3.9, NFB1, N... FASCIATA 2, Transducin/WD40 re... Potri.007G108200
[exp]
32.71 0.7474
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Potri.019G040000
[exp]
33.04 0.7366

Potri.003G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.