Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 236 / 1e-75 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 230 / 5e-73 FIB fibrillin (.1) AT3G26070 48 / 4e-06 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 45 / 3e-05 plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137900 [exp] 455 / 1e-160 AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 234 / 2e-74 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 47 / 1e-05 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.001G209600 [exp] 46 / 2e-05 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 42 / 0.0003 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035384 [exp] 335 / 1e-113 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 333 / 9e-113 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 223 / 3e-70 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 219 / 1e-68 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10033514 [exp] 46 / 1e-05 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 45 / 3e-05 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10004171 [exp] 44 / 0.0001 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10020982 [exp] 42 / 0.0004 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.003G095900.1 pacid=42785437 polypeptide=Potri.003G095900.1.p locus=Potri.003G095900 ID=Potri.003G095900.1.v4.1 annot-version=v4.1 ATGGCACTCCTCTACACCTCACACTCCTCCCTCCTGTTCTCCCCCTCCTCTTCCAAAAAACCCAACAACCCACTCCCTCTTTCCAAAACCCCACCACTAC CATCTCTCTCTTTCTTCCGTAAACCCCCTCAAACCCTCCGTTTCCTTACTCAAATTACTAAAAAACCCAAATTCCGGACCCTCCTTACACACATCTCCTC TTCCTCCTCTGACCCGACACCTGACTCAGATCCTGAACCAAACTCACCTCCGGTAGGTATCACTGACGAGTGGGGTGAGAAGGCAGAACCCGAACTTGAA CCTGAATACCCGAAAGCTGCGGACTTGGATCCTCCGAGAAATGATGACGAGTGGGGTGGGGAATTTGTTGCCGTGGAAAATGGCAACGCAGCGGCACCGA GTTCCAGCAGTGCTGTGGTCGTGGAGAAGGATGAGAGGGTTGAGGAGTTGAAGAGGGGTTTGGTAGATACGGTCTATGGTACTGATTTTGGGTTTCGGGC CAGCCCGGAAATCCGGGCTGAGGCTTTGGAGTTGGTTAATCAGCTGGAGGTTGTAAATCCGACTCCGGCACCTGTGGATGCTACTGGGGTGCTTGATGGC AAATGGGTTTTAGTGTATACTGCATTTTCAGAGCTGTTGCCACTTCTGGCAGCAGGCGCTACACCTTTCTTGAAAGTGAAAAGCATATCTCAAACAATTG ATGCTAGCAGTCTATCTATAGTGAACTCAACCACATTGTCAGGCCCTTTTGCTACTTTCTCCTTTAGCGCTTCTGCTACTTTTGAGTTTCGGACTCCTTC AAGAATACAGGTGGAGTTTAAGGAAGGCGTGCTGCAACCTCCACAGATAAATTCCAGCGTAGAACTCCCAGAAAATGTTGATCTTTTTGGGCAAAAGATC AATCTGTCTCCCATCCAGCAATCTCTTGGTCCTCTGCAGGAGGCAGCAGCAAATATTGGAAGAACCATTTCTGGCCAGCCACCGCTTAAGGTACCCATTC CAGGCAACCGAGCAAGCACCTGGCTTCTCATTACCTACCTTGATGAGGATCTCCAAATCTCAAGAGGGGATGGTGGTCTTTTCGTTCTTGCTAAAGAAGG AAGCCCTCTTCTAGAACTGTAG
AA sequence Show only first row Show all	>Potri.003G095900.1 pacid=42785437 polypeptide=Potri.003G095900.1.p locus=Potri.003G095900 ID=Potri.003G095900.1.v4.1 annot-version=v4.1 MALLYTSHSSLLFSPSSSKKPNNPLPLSKTPPLPSLSFFRKPPQTLRFLTQITKKPKFRTLLTHISSSSSDPTPDSDPEPNSPPVGITDEWGEKAEPELE PEYPKAADLDPPRNDDEWGGEFVAVENGNAAAPSSSSAVVVEKDERVEELKRGLVDTVYGTDFGFRASPEIRAEALELVNQLEVVNPTPAPVDATGVLDG KWVLVYTAFSELLPLLAAGATPFLKVKSISQTIDASSLSIVNSTTLSGPFATFSFSASATFEFRTPSRIQVEFKEGVLQPPQINSSVELPENVDLFGQKI NLSPIQQSLGPLQEAAANIGRTISGQPPLKVPIPGNRASTWLLITYLDEDLQISRGDGGLFVLAKEGSPLLEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	0	1
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	2.82	0.9753
AT1G32580			plastid developmental protein ...		Potri.010G068300 [exp]	3.16	0.9706
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	4.24	0.9671
AT5G48470			unknown protein		Potri.002G251400 [exp]	6.48	0.9641
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	8.66	0.9655
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	10.39	0.9506
AT5G52960			unknown protein		Potri.012G033700 [exp]	11.13	0.9668
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	11.53	0.9569
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	12.16	0.9502
AT3G26630			Tetratricopeptide repeat (TPR)...		Potri.002G220600 [exp]	12.24	0.9629

Compare expression of checked genes

Potri.003G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.