Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46880 872 / 0 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT4G17710 683 / 0 HD HDG4 homeodomain GLABROUS 4 (.1) AT4G04890 615 / 0 HD PDF2 protodermal factor 2 (.1) AT1G05230 590 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 588 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT4G21750 588 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G00730 561 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G17920 546 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G52170 457 / 1e-150 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G79840 443 / 2e-144 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137800 [exp] 1299 / 0 AT5G46880 842 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) Potri.015G034100 [exp] 640 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 627 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.004G020400 [exp] 617 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 612 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 610 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 602 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 602 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G154700 [exp] 594 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031321 [exp] 678 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10006765 [exp] 612 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 609 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 603 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 593 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 592 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10036567 [exp] 520 / 9e-174 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 494 / 3e-164 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10031892 [exp] 487 / 4e-163 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10005759 [exp] 473 / 4e-156 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.003G096000.7 pacid=42787055 polypeptide=Potri.003G096000.7.p locus=Potri.003G096000 ID=Potri.003G096000.7.v4.1 annot-version=v4.1 ATGTTTGGTGATTGCCAAGTTATGTCAAACATGGGAGGGAATGTAGTCTCGTCTGATAACCTCTACTCATCGCCGATCGGAAACCCTAACTTCAGCTTCA TGTCAAGCATGCCCTTCCACACTTTCTCACCCATCATCCCTAAAGAAGAAAATGGGTTAGTCATGCGAGGGAAGGAGGAAATGGAAAGTGGTTCTGGCAG TGAACAACTTGAAGACAGGTCAGGGAACGAGCAAGAAAGCAGCGAGCAACCTCCAAAGAAGAAACGTTACCATAGGCACACTGCAGCTCAGATCCAAGAA ATGGAAGCCATGTTTAAAGAATGTCCACACCCAGATGACAAACAAAGAATGAGACTTAGCCAAGAACTTGGTCTAAAACCACGCCAAGTTAAGTTTTGGT TCCAAAACCGCCGTACCCAAATGAAGGCACAGCAAGACCGGTCGGATAATCTTATACTCAGGGCAGAAAATGAGAGCTTGAAGAATGACAATTACAGGCT ACAAGCGGAGTTACGCAGTCTTATTTGTCCCAATTGTGGGGGCCAAGCCATGCTTGGAGCAATTCCTTTTGAGGAACTTCGACTTGAAAATGCAAGACTT AGAGATGAGTTGGAGCGTGTTTGCTGTATTACTTCACGGTATGGCGGCCGGCAAATCCACTCAATGGTACCGGTTCCTTCATTCGTTCCCCCTTCCTTGG ATTTGGATATGAACATGTATTCAAGGCCGTTTCCAGAGTATTTGGGCACTTGCACCGATATGATGCCGGTGCCTGTGCCTGTGCTGGAAGAACCATCTTC ATTTCCTGAGGCTGGTGTGGTATTAATGGAGGAGGGAAAAGGTCTTGCGATGGAACTTGCATTGTCGTCCATGGATGAACTTGTGAAGATGTGTCATGCA AATGAGCCTCTTTGGATCAGAAACATTGAAAATGGGAAGGAGGTGCTTAATCTTGAAGAGCACGGGAGAATGTTTCCATGGCCTTCCAATCTCAAGCAGA ATTCAAGTGAGACGAGGACTGAAGCTACTCGTGATTGTGCTGTGGTTATAATGAATAGCATAACCTTGGTTGACGCTTTCCTGGATGCTAATAAATGGAT GGAGCTGTTTCCCTCCATTGTTGCTAGAGCAAAAACTGTTCAAGTTATAACACCAGGCATTTCCGGTGCAAGTGGTTCTCTTCACCTGATGTATGCTGAA TTGCAAGTTCTTTCCCCATTGGTGCCAACTCGGGAGACGTATTTTCTTCGCTTTTGCCATCAAAATGTAGAGGAGGGCACTTGGGCCATTGTCGATTTCC CTCTTGATAGACTCCACGACAACATCCAGCCGTCCTTTCCCCTGTATAAGAGACATCCGTCCGGTTGTGTTATTCAAGACATGCCCAATGGGTACTCAAG GGTGACATGGATAGAACATGCAGAGATAGAGGAGAAGCCTGTCCATCAGATATTTAGCCAGTATGTCTATAGTGGGATGGCATTCGGAGCACATCGCTGG TTAACAGTCTTACAGAGACAATGCGAGAGGGTTGCTAGCCTCATGGCTAGAAATATCTCTGACCTAGGAGTAATACCCTCTCCTGAAGCACGGAAGAATA TGATGAGACTGGCTCAAAGAATGATCAGAATATTTAGCCTGAATATCAGCTCTTCTAGTGGCCAATCATGGACCGGTTTATCGGATTCATATGATGACAC TGTTAGAATTACCACAAGGAAAATCACTGAGCCTGGGCAGCCTAATGGGGTTATTCTCTCTGCAGTATCCACAACTTGGCTGCCCTATCCTCACTACCAA GTCTTTGACCTCTTGAGGGATGAACATCGCAGATCTCAGCTGGAACTTCTTTCCAATGGGAATGCCTTGCATGAGGTTGCTCACATTGCCAATGGCTCTC ATCCAGGAAACTGCATTTCTCTTCTGCGCATCAACGTTGCAAGCAACTCATCACAGCATGTAGAGCTCATGCTACAAGAGTGTTGCACTGATCAATCCGG CAGCCTTGTTGTCTACACCACCGTTGATGTTGAGTCAATTCAGCTGGCAATGAGTGGCGAGGATCCATCCTGCATTCCTCTACTTCCACTAGGTTTTGTC ATAGTTCCAGTAGAATCCAGCAGTGCTGTCAGTGAAGGCAACTCAATGCCATCTAATTCCGAGGATGGAAATGGTCATAACAACTCAGGCTGTCTGCTCA CTGTGGGGCTCCAAGTCCTTGCAAGCACTATTCCATCTGCAAAGCTCAACCTCTCCAGCGTTACTGCAATAAACAACCATCTGTGCAACACAGTGAACCA AATCACCGCTGCTCTTAGCAGCACCACCACAACCACCACCATCACCACCACTAGCAGCTGCCTTGACAACGGCAATGCTGTAGGCTCTTGCAATATCGAG CCTACAGCTGCATCGAAACAGGTTTAG
AA sequence Show only first row Show all	>Potri.003G096000.7 pacid=42787055 polypeptide=Potri.003G096000.7.p locus=Potri.003G096000 ID=Potri.003G096000.7.v4.1 annot-version=v4.1 MFGDCQVMSNMGGNVVSSDNLYSSPIGNPNFSFMSSMPFHTFSPIIPKEENGLVMRGKEEMESGSGSEQLEDRSGNEQESSEQPPKKKRYHRHTAAQIQE MEAMFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNLILRAENESLKNDNYRLQAELRSLICPNCGGQAMLGAIPFEELRLENARL RDELERVCCITSRYGGRQIHSMVPVPSFVPPSLDLDMNMYSRPFPEYLGTCTDMMPVPVPVLEEPSSFPEAGVVLMEEGKGLAMELALSSMDELVKMCHA NEPLWIRNIENGKEVLNLEEHGRMFPWPSNLKQNSSETRTEATRDCAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQVITPGISGASGSLHLMYAE LQVLSPLVPTRETYFLRFCHQNVEEGTWAIVDFPLDRLHDNIQPSFPLYKRHPSGCVIQDMPNGYSRVTWIEHAEIEEKPVHQIFSQYVYSGMAFGAHRW LTVLQRQCERVASLMARNISDLGVIPSPEARKNMMRLAQRMIRIFSLNISSSSGQSWTGLSDSYDDTVRITTRKITEPGQPNGVILSAVSTTWLPYPHYQ VFDLLRDEHRRSQLELLSNGNALHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQECCTDQSGSLVVYTTVDVESIQLAMSGEDPSCIPLLPLGFV IVPVESSSAVSEGNSMPSNSEDGNGHNNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVNQITAALSSTTTTTTITTTSSCLDNGNAVGSCNIE PTAASKQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	0	1
					Potri.002G252400 [exp]	1.00	0.9800
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	1.41	0.9713
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	2.00	0.9667
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	2.23	0.9504	ERL1.2
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	3.74	0.9492
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	4.35	0.9236
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	5.47	0.9497
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	7.74	0.9387	Pt-ACR4.2
AT5G16110			unknown protein		Potri.005G108633 [exp]	8.00	0.9098
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	8.48	0.9255	ACR4.3

Compare expression of checked genes

Potri.003G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.