Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46910 924 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 243 / 7e-67 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT2G34880 224 / 1e-61 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G30810 223 / 3e-61 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT4G20400 221 / 4e-60 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G08620 221 / 2e-59 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT5G04240 206 / 1e-54 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT1G63490 193 / 1e-50 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 150 / 3e-37 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137700 [exp] 1541 / 0 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.015G089000 [exp] 271 / 5e-76 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 270 / 1e-75 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.019G018700 [exp] 229 / 2e-62 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 229 / 3e-62 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 214 / 5e-57 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 209 / 9e-56 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.008G037800 [exp] 207 / 5e-55 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.010G224700 [exp] 207 / 7e-55 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030988 [exp] 1036 / 0 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 1034 / 0 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10019482 [exp] 251 / 2e-69 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10042566 [exp] 226 / 7e-61 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 220 / 7e-59 AT3G04490 1370 / 0.0 unknown protein Lus10008495 [exp] 210 / 9e-56 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10008063 [exp] 206 / 4e-55 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10043332 [exp] 205 / 4e-54 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10037989 [exp] 204 / 9e-54 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10009218 [exp] 204 / 1e-53 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] Cupin PF02375 [poplar] [flax] JmjN jmjN domain CL0029 [poplar] [flax] PF02928 [poplar] [flax] zf-C5HC2 C5HC2 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G096100.2 pacid=42785069 polypeptide=Potri.003G096100.2.p locus=Potri.003G096100 ID=Potri.003G096100.2.v4.1 annot-version=v4.1 ATGGTGGAAGGAAGGGTATGCTTGTCCAAAGAAGCTCGGAATGGGCTAGAATATTTGAAGCGCAAAAGGCTTCAAAAAATGAAATTAGAAAGTGTCACAG AAACTGTAAGTATTCCCAGTATGATGAGTAGAAGCGGAGGAGATGCTTTAAGGGCTTCAGCATCGTGTGGTGTTAGGATAAATGGTAACATGGAATCATT CTCTAGGTCTGCTGGTGCTTCAAGTGGGAAGGATGTGTTTTCAAAGCGGAAAGTGGAAAAGTTTGACACTAGTGATTTAGAATGGACTGAAAAAATCCCA GAATGCCCTGTCTATTGTCCGACAAAGGAAGAGTTTGAGGATCCCTTGGTGTACTTGCAGAAAATAGCTCCAGAAGCTTCAAGATATGGTATATGCAAGA TTATTTCTCCTATTAGTGCATCTGTTCCTGCTGGGATTGTATTAATGAAAGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAACCTCTTCGTCTTGC TGAGTGGGATAGTAGTGACCGAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCATGATTTCGAGAAAATGGCGAACAAGGTTTTTGCCCGTAGA TATTGTAGTGCCAGTTGTCTTCCTGCGACGTACATGGAAAAAGAATTTTGGCATGAAATTGCGTGTGGAAAGACAGAAACGGTTGAATATGCATGCGATG TTGATGGCAGTGCCTTTTCATCGTCTCCCAGGGACCCGCTTGGAAATAGCAAGTGGAATCTGAAGAATCTTTCCCGGCTGCCGAAGTCCATTTTGCGCCT TCTGGGACCAGCTATTCCGGGGGTAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGCGTGTTTGCTTGGCATGTAGAAGATCATTATTTGTACAGC ATTAATTACCATCATTGCGGAGCATCAAAAACTTGGTATGGAATTCCTGGTCATGCAGCTTTAAAATTTGAAAAAGTGGTTAGAGAACATGTGTATAGCC ATGATATTCTATCAACTGATGGGGAGGATGGAGCTTTCGATGTACTTTTGGGGAAAACAACTCTGTTTCCCCCAAATATATTGTTAGAACATGATGTCCC TGTGTACAAGGCTGTGCAAAAGCCTGGGGAGTTTATAATCACTTTCCCGAGAGCTTATCATGCAGGATTCAGCCATGGTTTCAACTGTGGTGAGGCTGTG AACTTCGCAATTGGTGACTGGTTTCCTTTGGGGGCTGTAGCTAGCTGGCGCTATGCACTACTCAACAGGGTGCCTCTACTTCCCCATGAAGAACTTCTGT GCAAAGAAGCAATGCTTCTTTATACAAGTCTAGAACTTGAAGATTCAGATTATTCCTCTGCGGACCTGGTTTCCCATAATTGGATTAAGGCTTCTTTTGT GAAGCTGATGCGATTCCACCACCGTGCTCGCTGGTCTATAATGAAATCAAGAGCATGCACTGGCCTTTTGCCAAATACCAATGGGACAATCTTATGCACC TTATGTAAACTGGATTGCTATGTGGCATTCCTTAACTGCAGCTGTGACTTGCATCCGGTGTGCCTTAGACATGATTTCAGTTCACTTGGCTTTTCATGTG GGAGAAATCACACACTGTTTTTGAGGGAGGATATTTCTAATATGGAAGCTGTAGCTAAGAAATTTGAGAAGGAAGATGGAATATTAGAGGAGATTAGACG GCAAGCAAACACTGGTGATGATTTGTATTCTTATCAGTTATCAGTTAAGTTTCATTGTGTTCCCGAGGATGGGTACTTTCCTTATTGTGATATAAGCTTT GATTTCAATGCCGAGACTCCTGCGATAACCTGGGAATGTTCACAAGAGTTTAGCAAATCCACAAACAAGTATGGTATTGGAAATTTTAGACCTGAATACT CTGAAGCTTCCATTTCCTGTGCTGCATCCACTCTCTGTTCTTTTGGAGAGCCAGTGGAAAGCTTTTCTGCATCTGACAACGTGCAGGCTGACTTTAATGC AGGAAAACTTGATCCGGAAAGGTTATTTGAGGAAGGATTGCACAGCAAGCATGAGTACTCAGTATCCTCTCAATCACATGATGATGAATTCTTGAGAATC CAGAAAAGTAATCCTCGAGGGTTAGAGGTTAAATCCAGTGTTGATGAACAAAGTGATGATTCTGACTCGGAGATTTTTAGGGTTAAGCGCCGGTCTTCTC TGAAAGTTGAAAAAAGAGTTGTGAATGATGCTGCATCTTCAAAGAACTCTGAACACCAGGGGCTTAAAAGACTGAAGAAGCTCCAACATGAAGGAAGATA TGGGCAAACGACATCATCAGAATACTGCAGAGCTGATGAATCAAATCATGGTTCCACTTCTTCAAATTCAGATTATAAAGAAGCACCAGAGTGTGCTTCA AAGGACAGGGTTGCCAGGGGAAGTACTATTCCATTCTCGATTAAGTTCAAGAAGTTGACCTCCAAGGAAGAAATGGGTAGACAGCGAGAACACCACAGAT TGGACCGCTTCCAGCATGAACTGGGAAAGACTACGAGGGAACCACCTCCTATAGAGATTGGGCCAAAGCGTCTTAAAGTCAGAGGCCCGTCATCTCTAGG TTCAGAGAGCAGGTTAGATTGA
AA sequence Show only first row Show all	>Potri.003G096100.2 pacid=42785069 polypeptide=Potri.003G096100.2.p locus=Potri.003G096100 ID=Potri.003G096100.2.v4.1 annot-version=v4.1 MVEGRVCLSKEARNGLEYLKRKRLQKMKLESVTETVSIPSMMSRSGGDALRASASCGVRINGNMESFSRSAGASSGKDVFSKRKVEKFDTSDLEWTEKIP ECPVYCPTKEEFEDPLVYLQKIAPEASRYGICKIISPISASVPAGIVLMKEKAGFKFTTRVQPLRLAEWDSSDRVTFFMSGRNYTFHDFEKMANKVFARR YCSASCLPATYMEKEFWHEIACGKTETVEYACDVDGSAFSSSPRDPLGNSKWNLKNLSRLPKSILRLLGPAIPGVTDPMLYIGMLFSVFAWHVEDHYLYS INYHHCGASKTWYGIPGHAALKFEKVVREHVYSHDILSTDGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAV NFAIGDWFPLGAVASWRYALLNRVPLLPHEELLCKEAMLLYTSLELEDSDYSSADLVSHNWIKASFVKLMRFHHRARWSIMKSRACTGLLPNTNGTILCT LCKLDCYVAFLNCSCDLHPVCLRHDFSSLGFSCGRNHTLFLREDISNMEAVAKKFEKEDGILEEIRRQANTGDDLYSYQLSVKFHCVPEDGYFPYCDISF DFNAETPAITWECSQEFSKSTNKYGIGNFRPEYSEASISCAASTLCSFGEPVESFSASDNVQADFNAGKLDPERLFEEGLHSKHEYSVSSQSHDDEFLRI QKSNPRGLEVKSSVDEQSDDSDSEIFRVKRRSSLKVEKRVVNDAASSKNSEHQGLKRLKKLQHEGRYGQTTSSEYCRADESNHGSTSSNSDYKEAPECAS KDRVARGSTIPFSIKFKKLTSKEEMGRQREHHRLDRFQHELGKTTREPPPIEIGPKRLKVRGPSSLGSESRLD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	1.41	0.8431
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	2.82	0.8065
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	3.87	0.7639	DREB65
AT1G72790			hydroxyproline-rich glycoprote...		Potri.001G198900 [exp]	4.58	0.7646
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.007G071500 [exp]	6.32	0.7525
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	7.74	0.7614
AT5G38700			unknown protein		Potri.014G123400 [exp]	7.74	0.7639
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	9.00	0.7512
AT4G20400		PKDM7B, JMJ14	JUMONJI 14 (.1.2)		Potri.011G155100 [exp]	12.00	0.6801
AT5G38700			unknown protein		Potri.002G198800 [exp]	15.09	0.7375

Compare expression of checked genes

Potri.003G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.