Plant FIBer expression Database

Potri.003G096600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35500 448 / 2e-157 SKL2 shikimate kinase-like 2, shikimate kinase like 2 (.1)
AT3G26900 47 / 1e-05 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
AT2G21940 42 / 0.0004 ATSK1 shikimate kinase 1 (.1.2.3.4.5)
AT4G39540 42 / 0.0006 ATSK2 shikimate kinase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030990
[exp]
456 / 2e-158 AT2G35500 445 / 6e-154 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Lus10035389
[exp]
245 / 2e-78 AT2G35500 240 / 2e-76 shikimate kinase-like 2, shikimate kinase like 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01202 SKI Shikimate kinase
CL0190 HSP20 PF04969 CS CS domain
Representative CDS sequence
>Potri.003G096600.1 pacid=42786256 polypeptide=Potri.003G096600.1.p locus=Potri.003G096600 ID=Potri.003G096600.1.v4.1 annot-version=v4.1
ATGGCCACCATCACCACTACGGCGACTCTTTCCTTCCACTCCCAAAACCCCATTAAAACTCTACCATCATTCTCTCTCTCAAATATCCCCTTTTCCATTT
CCAAAACCAATTTTACTTCCGTCGCCAATTTTTCTCTTTCAATTCCTGCCTCTAAATCAAACAATGCGAGCAGCCCTCTCAACAGATACAGTCGCTTCTC
TTGCAACTGCATCTCCACAGCCACCCCCAACACAAATTACGAGTTTTCTGATAGTTCTTCAGAAGTGGAATTGAGATTATCTCTTGTGGGACTAGACATT
CAAAGTTCCAGAGATATATTCGTGGATGCAGATGGCACCTCCTTAGTAGTCCAAGTACAGCACTCTGGGTCGCATATCACACTTATAGAAACTAATAAGA
TGTTCGAGAAAATAAAGCCTGCTGAAACAATATGGTTCATAGATGATGATCAACTTGTTATCAACATGAAGAAGCAAGACCCAGATTTGAAATGGCCTGA
CATTGTGGAGTCATGGGAATCCTTGACAGCAGGATCTATGCAACTCCTGAAAGGGGCATCAATCTTCCTTGTTGGTGATTCAACTGAAATTAACCAAAAA
GTGGCTCGAGAACTTGCTGTTGGTCTTGGGTACACGCTACTTGATACACAGGAGTTGCTAGAAACATTTGCTAAGCAAACAATTGATTCATGGGTGCTTG
CTGAAGGCTCTGACTCTGTAGCTGAAGCAGAATGTGCTATATTAGAAAGCTTAAGTAGTCATGTACGTGCTGTTGTTTCAACATTAGGAGGGAAGCAGGG
AGCTGCTGGAAAGGCTTATAAATGGCAGCATCTTTATGCAGGGTTCACTGTCTGGTTGTCACAGACCGAAGCCTTAGATGAGGATTCAGCTAAAGAGGAG
GCTAGAAAGAATGTTAAAGATCGCAGTGTAGCATACTCAAATGCTGATGTGGTTGTCAAGCTCCAGGGTTGGGATTCTGATCATGCCAAAAGTGTTGCTC
AGGCATCCTTGAGTGCTCTCAAGCAGTTGATTCTGTCTGACAAGAAACTTCCAGGTAAGAAGAGCCTTTATATAAGGCTAGGATGTCGTGGGGATTGGCC
AAACATCAAGCCTCCTGGTTGGGATCCATCAAATGAAGCTGAATCGATCTCCTAG
AA sequence
>Potri.003G096600.1 pacid=42786256 polypeptide=Potri.003G096600.1.p locus=Potri.003G096600 ID=Potri.003G096600.1.v4.1 annot-version=v4.1
MATITTTATLSFHSQNPIKTLPSFSLSNIPFSISKTNFTSVANFSLSIPASKSNNASSPLNRYSRFSCNCISTATPNTNYEFSDSSSEVELRLSLVGLDI
QSSRDIFVDADGTSLVVQVQHSGSHITLIETNKMFEKIKPAETIWFIDDDQLVINMKKQDPDLKWPDIVESWESLTAGSMQLLKGASIFLVGDSTEINQK
VARELAVGLGYTLLDTQELLETFAKQTIDSWVLAEGSDSVAEAECAILESLSSHVRAVVSTLGGKQGAAGKAYKWQHLYAGFTVWLSQTEALDEDSAKEE
ARKNVKDRSVAYSNADVVVKLQGWDSDHAKSVAQASLSALKQLILSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSNEAESIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35500 SKL2 shikimate kinase-like 2, shiki... Potri.003G096600
[exp]
0 1
AT3G11945 PDS2, ATHST PHYTOENE DESATURATION 2, homog... Potri.006G197600
[exp]
1.41 0.9687
AT1G50450 Saccharopine dehydrogenase (.... Potri.009G050100
[exp]
5.47 0.9543
AT1G80030 Molecular chaperone Hsp40/DnaJ... Potri.003G031800
[exp]
5.65 0.9534
AT5G16650 Chaperone DnaJ-domain superfam... Potri.019G041400
[exp]
8.36 0.9438
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Potri.007G129800
[exp]
11.40 0.9473
AT5G27290 unknown protein Potri.013G029000
[exp]
12.96 0.9442
AT2G28605 Photosystem II reaction center... Potri.007G100800
[exp]
14.89 0.9200
AT2G41680 NTRC NADPH-dependent thioredoxin re... Potri.006G049100
[exp]
16.49 0.9460
AT3G63510 FMN-linked oxidoreductases sup... Potri.001G264900
[exp]
17.20 0.9354
AT5G46110 TPT, APE2 triose-phosphate ⁄ phosp... Potri.011G057800
[exp]
20.90 0.9387 APE2.1

Potri.003G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.