Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32190 386 / 1e-132 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 290 / 6e-97 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 285 / 5e-95 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G30380 286 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 270 / 3e-88 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 271 / 4e-88 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 267 / 7e-87 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 266 / 1e-86 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 263 / 3e-86 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 254 / 5e-82 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136400 [exp] 566 / 0 AT1G32190 412 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G111400 [exp] 305 / 8e-103 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 299 / 2e-100 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 285 / 2e-93 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 284 / 6e-93 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 281 / 2e-92 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 275 / 1e-89 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 273 / 4e-89 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 273 / 4e-89 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030951 [exp] 454 / 9e-160 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040096 [exp] 440 / 6e-154 AT1G32190 452 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 287 / 2e-95 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 281 / 2e-93 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 283 / 6e-93 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 283 / 7e-93 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 271 / 2e-88 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 269 / 1e-87 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 265 / 2e-85 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 263 / 7e-85 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.003G096900.1 pacid=42784798 polypeptide=Potri.003G096900.1.p locus=Potri.003G096900 ID=Potri.003G096900.1.v4.1 annot-version=v4.1 ATGGGGTGCATGCTCTCTCAATTAGCAGCAAAGTTTGCTTTCTTTCCTCCATCTCCACCTACATATCAGATTAAGAAGAGAGACAATGGCAAGTTCTCTG TGGTCTCAACTTCTCCTTCTATGCCACTTCCTCTTGCTGATGATAGTTCGTTAGATATACTCTTGATTGATACAAAGAGAGGCAACAAGATTGTTGCTTT TTATCTCAAAAACCCTTATGCAAGACTCACTGTGCTTTACTCTCATGGTAATGCTGCTGACCTTGGCCAGCTTTATGATCTCTTTGTGCAGCTCAAGGTC AATCTCAGAGTTAATATCATGGGCTATGACTATTCTGGTTATGGTGCTTCATCTGGCAAGCCAAGTGAATCCAACACATATGCTGATATAGAGGCAGTTT ACGAGTTTCTTCAGACTCAGTATGGAGTCAGTCAGGAAGACTTAATTTTGTATGGGCAGTCAGTTGGTAGCGGGCCAACATTGCACTTGGCGGCGAAGTT GCCAAGGCTGAGAGGTGTAGTTTTGCACAGTTCCATTCTTTCTGGTCTCCGTGTGCTCTGCCATGTGAAGTTTACATTTTGCTTTGACATCTACAAGAAT GTAAACAAAATTCGGAAGGTGAAGAGCCCTGTTCTAGTGATACATGGCACAGAGGATGATGTTGTGAACTGGTTACACGGTGATGGGCTGTGGAAAATGT CAAAAGAACCGTACGAGCCTTTATGGATTGAAGGAGGAGGGCACTGTAACTTGGAACTGTATCCTGATTACATCCGCCATCTCAGCAGGTTTATATACGA AATGGAGAATATAACCGCAGAGATCCATCTCCAAAAGATCAGGCAGAATCTCCGTATAAAACCTAGGTCTGAGAATGCTTCCAACAAGTGCTGTGGGTTC AAACTGTGGCGACCTAAATGCTCAGAATGTTTAAGATCCAGGTGCATAAAATGCTGGTGGCGTCCCAAGTGCACACAAAGCCGGAGACCCAAATGTTCAA GTTGTGTTGCATGTTGCTGGCGACCCAGATGCCCTAAATGTCCAATACACGGTTGCTGCTGCAGAATAAGTTGTGCGCCATGGAGATGCTATTTGGGAAA ACACAGTGGGATAAATGGAAAGCAGGATGGCTGA
AA sequence Show only first row Show all	>Potri.003G096900.1 pacid=42784798 polypeptide=Potri.003G096900.1.p locus=Potri.003G096900 ID=Potri.003G096900.1.v4.1 annot-version=v4.1 MGCMLSQLAAKFAFFPPSPPTYQIKKRDNGKFSVVSTSPSMPLPLADDSSLDILLIDTKRGNKIVAFYLKNPYARLTVLYSHGNAADLGQLYDLFVQLKV NLRVNIMGYDYSGYGASSGKPSESNTYADIEAVYEFLQTQYGVSQEDLILYGQSVGSGPTLHLAAKLPRLRGVVLHSSILSGLRVLCHVKFTFCFDIYKN VNKIRKVKSPVLVIHGTEDDVVNWLHGDGLWKMSKEPYEPLWIEGGGHCNLELYPDYIRHLSRFIYEMENITAEIHLQKIRQNLRIKPRSENASNKCCGF KLWRPKCSECLRSRCIKCWWRPKCTQSRRPKCSSCVACCWRPRCPKCPIHGCCCRISCAPWRCYLGKHSGINGKQDG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32190			alpha/beta-Hydrolases superfam...		Potri.003G096900 [exp]	0	1
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.018G028000 [exp]	5.74	0.8428
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Potri.014G163100 [exp]	13.30	0.7251
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	18.97	0.8676
					Potri.001G004432 [exp]	19.69	0.8635
AT1G64650			Major facilitator superfamily ...		Potri.001G085032 [exp]	23.36	0.8616
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Potri.009G150000 [exp]	28.46	0.6596
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	30.59	0.8606
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	34.49	0.8584
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G110400 [exp]	35.09	0.8582
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.015G112140 [exp]	39.11	0.8512

Compare expression of checked genes

Potri.003G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.