Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1610 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1590 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1433 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1346 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1280 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1252 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 823 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 818 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 807 / 0 CESA10 cellulose synthase 10 (.1) AT4G32410 800 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136200 [exp] 1964 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1638 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1634 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1479 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1450 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1361 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1335 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1259 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1233 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009248 [exp] 1563 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10002134 [exp] 1473 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1456 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10038008 [exp] 1438 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026568 [exp] 1424 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1415 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1384 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1363 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10012119 [exp] 1290 / 0 AT5G16910 1285 / 0.0 cellulose-synthase like D2 (.1) Lus10000755 [exp] 1190 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14570 [poplar] [flax] zf-RING_4 RING/Ubox like zinc-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G097100.1 pacid=42786471 polypeptide=Potri.003G097100.1.p locus=Potri.003G097100 ID=Potri.003G097100.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGATCCATACCATCTAAGAAGAGCACCCACAATTCACCACTATAGTAACTCAAGGGAGGATCTTGATAGTGAAATTGGCAGTGTAGAAT TTGTTACCTATACAGTCCACATACCGCCCACACCTAATAACCAAGCAGTGGAAATCCCTGCAGAGAATGAAAAGAAGATGGAGAGGAGTTTCACGTCGAA TTCTATGTTTACAGGTGGGCATAATTGCGCTACTCGTGCGCATTTGAAAGAAAAAACGATCGAGTCCCAAACAAGCCATCCTCGAGGGGCAGGTGCAAAC GGGTCGTTTTGTGCGGTGCCAGGCTGTGATGCTCAGGTCATTGCTGATAAACGTGGCGTTGATTTAGTACCTTGTGAATGTGAATACAAGATTTGTTGGG ATTGTTGTAAGGATGTCCTGGCTACTGGTGACGGGATATGCCCTGGTTGCAAAGAACCTTATAGGAGTCATGATGTGCCCGAGTTGCATAGCAGGAGGTT ATCTTTCGGTAAATCCAGTAAAGCCTTGGCCAAGAGCCATAGTGGTGAACTTGATTATTCCCAATATTTATTCGATTCAATGACGAATTATGGGTACGGA AATGCTTTGTGCCCAACTGATGGTGTGAAGGGCAATGATGAGGGTACTAGTGGTGTCCCGAAATCTCTTGTTGAGAAACAATGGAAACCCCTTACCCGTG AATTGAAAATATCTACTAAAGTTATTGCTCCATATCGGCTTCTAATCCCTGTCCGAATGATTGTTCTTGCATTATTCCTGCGTTGGAGGGTCTCAAATCC TAATGAAGATGCAAGATGGTTGTGGGGCATGTCTATAGTTTGTGAAATCTGGTTTGCTTTTTCTTGGCTACTTGACCAGCTCCCGAAGCTTTGTCCAATT AACCGTGTTACTGACCTTGATGTTCTGAAGGAGAAGTTCGAAACTCCTAGTCCAAGTAATCCAACAGGAAAATCTGACCTTCCTGGCATAGATATCTTTG TTTCTACTGCAGATCCAGAGAAAGAACCACCCCTTGTTACTGCAAACACCATTCTGTCTATTCTTGCAGCTGACTACCCAGTTGAGAAGCTCTCGTGTTA TGTTTCTGATGATGGAGGTGCTTTGCTAACTTTTGAAGCCATGGCAGAGGCTGCTAGTTTTGCCAGCTTGTGGGTTCCATTTTGTAGGAAACATGAAATT GAGCCTAGAAACCCAGAATCTTATTTCAATATGAGAAGAGATCCTTACAAGAATAAAATCCGCCCAGATTTTGTTAGAGATAGAAGGCGGGCAAAACGTG AGTATGATGAATTCAAGGTTCGAATTAACGGCCTTTCTGATTCAATTCGCCGCCGATCTGATGCCTATAATACTCAAGAAGAGCTAAAGGCAATGAAAAG ATGGAAAGAGAAAGTAGATGACGAACCAATGGATAGATTGAAGATCCCAAAGGCTACCTGGATGGCTGATGGAACCCATTGGCCTGGCACCTGGACAGTT CCAGCACCTGAGCATACTAGGGGTGATCATGCCAGCATCTTACAGGTAATGTTGCAGCCTCCTAGTGATGAACCACTAAAAGGAATAGCAGGGGATAGCA AATCCATGAACCTATCTGAAGTGGACATTCGCCTTCCTGTGTTGGTTTATGTTTCTCGTGAAAAGCGACCTGGTTATGATCACAACAAGAAGGCTGGGGC GATGAATGCACTGGTTCGAGCCTCCGCTGTTATGTCTAATGGACCTTTCATTCTTAACCTTGACTGTGACCACTACATATACAACTCCCAGGCATTGAGA GATGGCATATGCTTCATGATGGACCGGGGTGGGGAAGGCATTTGTTATGTTCAGTTTCCTCAGAGGTTTGAAGGAATTGATCCATCTGACCGCTATGCCA ATCACAACACTGTTTTCTTTGATGTCAACATGCGGGCCCTTGATGGGATACAAGGTCCAGTATATGTTGGAACAGGATGCCTCTTTCGTCGGACTGCCTT CTATGACTTCGATCCTCCAAGGTATGAAGATCATGGCAGCTGCTTCTTCGGCCGTCACAAGAAGGCTGCCGTTGCTTCTGCCCCAGAAATCAGCCAATCT CATGGAATGGAAGATGCAGAGAATCAGGAAATCAACGCTCCTCTTATTCCTAGAAAGTTTGGAAATTCAAGTTTGTTTCTTGATTCGGTAAGGGTGGCAG CATTTCAAGGTCTTCCCCTCGCAGACAATTCACATGTCAAATACGGACGACCTCCTGGTGCTCTAACTGGTCCTAGGCCCCTACATCTAGCCACAATTGC TGAGGCAGTGAATGTCATCTCTTGCTGGTATGAAGATAAAACTGAATGGGGCCAATCCGTAGGGTGGATTTATGGATCTGTAACTGAGGATGTTGTCACT GGGTATAGGATGCATGGACGAGGCTGGAGATCGGTTTATTGTGTGACTGAGAGGGATGCATTCCGTGGGACTGCCCCTATTAACCTTACTGATCGACTTC ATCAGGTTCTCCGGTGGGCGACTGGCTCTGTCGAGATATTCTTTTCTCGCAACAACGCCCTTCTGGGTGGCCCTAGGTTGAAGCTCCTGCAGAGGATTGC CTACCTCAATGTTGGAATTTACCCTTTCACTTCTATATTCCTCGTTGTTTACTGCTTCATTCCCGCATTTTCACTCTTCACCAATCAGTTCATCGTTGCG TCTCTAACTGTCACATTCCTAGTATACCTCTTTATCATCAGCGTGACCCTTTGCATTCTTGCTGTGCTTGAGATCAACTGGTCTGGAATTGAACTGGAGG AGTGGTGGAGGAATGAGCAGTTCTGGTTAATTGGAGGCACAAGTGCGCATCTTGCTGCCGTGCTCCAGGGGCTACTGAAGGTGATTGCAGGGATTGAGAT TTCATTCACATTGACATCTAAATCAGCTGGAGATGATGCTGACGATGAGTTTTCTGATCTCTATCTATTCAAATGGACATCTCTTATGATACTACCTTGC ACAATCATTATGACTAACTTCATTGCAATTGCAGTCGGTGTTTCCCGAACTATATATAGCGAAGCCCCTCAGTGGAGCAAGTTACTTGGAGGTGTGTTCT TCAGCTTCTGGGTCCTGGCTCATTTCTACCCCTTTGTAAAAGGGCTTATGGGAAGACGTGGGAAGACACCCACCATCATATACGTTTGGTCGGCTCTCCT TTCGATTTGTATTTCATTACTTTGGGTTGCTATTGACCCTCCATCAGGAAATAATCAAATCGGGGGACTATTCCAACTCCCATGA
AA sequence Show only first row Show all	>Potri.003G097100.1 pacid=42786471 polypeptide=Potri.003G097100.1.p locus=Potri.003G097100 ID=Potri.003G097100.1.v4.1 annot-version=v4.1 MAAADPYHLRRAPTIHHYSNSREDLDSEIGSVEFVTYTVHIPPTPNNQAVEIPAENEKKMERSFTSNSMFTGGHNCATRAHLKEKTIESQTSHPRGAGAN GSFCAVPGCDAQVIADKRGVDLVPCECEYKICWDCCKDVLATGDGICPGCKEPYRSHDVPELHSRRLSFGKSSKALAKSHSGELDYSQYLFDSMTNYGYG NALCPTDGVKGNDEGTSGVPKSLVEKQWKPLTRELKISTKVIAPYRLLIPVRMIVLALFLRWRVSNPNEDARWLWGMSIVCEIWFAFSWLLDQLPKLCPI NRVTDLDVLKEKFETPSPSNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFASLWVPFCRKHEI EPRNPESYFNMRRDPYKNKIRPDFVRDRRRAKREYDEFKVRINGLSDSIRRRSDAYNTQEELKAMKRWKEKVDDEPMDRLKIPKATWMADGTHWPGTWTV PAPEHTRGDHASILQVMLQPPSDEPLKGIAGDSKSMNLSEVDIRLPVLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSQALR DGICFMMDRGGEGICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTAFYDFDPPRYEDHGSCFFGRHKKAAVASAPEISQS HGMEDAENQEINAPLIPRKFGNSSLFLDSVRVAAFQGLPLADNSHVKYGRPPGALTGPRPLHLATIAEAVNVISCWYEDKTEWGQSVGWIYGSVTEDVVT GYRMHGRGWRSVYCVTERDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLGGPRLKLLQRIAYLNVGIYPFTSIFLVVYCFIPAFSLFTNQFIVA SLTVTFLVYLFIISVTLCILAVLEINWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDADDEFSDLYLFKWTSLMILPC TIIMTNFIAIAVGVSRTIYSEAPQWSKLLGGVFFSFWVLAHFYPFVKGLMGRRGKTPTIIYVWSALLSICISLLWVAIDPPSGNNQIGGLFQLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	0	1
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Potri.015G097000 [exp]	4.89	0.7235
AT3G46450			SEC14 cytosolic factor family ...		Potri.001G237400 [exp]	6.32	0.7095
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	6.92	0.7216	Pt-ADGT.3
AT2G32240			unknown protein		Potri.006G021200 [exp]	7.41	0.7370
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	9.79	0.6546
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	10.19	0.7405
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	10.67	0.7553
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.005G038100 [exp]	10.95	0.6811
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	11.35	0.7429
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.014G070300 [exp]	28.14	0.7149

Compare expression of checked genes

Potri.003G097100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.