Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XTR4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32170 436 / 7e-154 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 399 / 2e-139 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G14720 347 / 5e-119 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 340 / 4e-116 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G10550 245 / 2e-79 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 202 / 1e-62 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT5G65730 199 / 7e-62 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT3G44990 198 / 2e-61 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT2G36870 195 / 5e-60 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT4G13080 194 / 1e-59 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136100 [exp] 553 / 0 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.010G102300 [exp] 349 / 6e-120 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 343 / 1e-117 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.009G163850 [exp] 279 / 4e-93 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 232 / 4e-74 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.009G006600 [exp] 196 / 1e-60 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.002G244200 [exp] 196 / 1e-60 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.004G021000 [exp] 195 / 5e-60 AT1G11545 498 / 3e-180 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.016G098600 [exp] 191 / 1e-58 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010427 [exp] 447 / 3e-158 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 394 / 1e-137 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10013240 [exp] 357 / 7e-123 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 356 / 2e-122 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029000 [exp] 338 / 2e-115 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029165 [exp] 230 / 2e-73 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 226 / 6e-72 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10021422 [exp] 201 / 2e-62 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 198 / 3e-61 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 198 / 4e-61 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.003G097300.1 pacid=42785464 polypeptide=Potri.003G097300.1.p locus=Potri.003G097300 ID=Potri.003G097300.1.v4.1 annot-version=v4.1 ATGGATTGCTTATGTTGTTGGTCTGTCTCGAAACCTTTGTATCTCCTCCTCTTCTTTTACTTCTTTTCTTGCACTGCCAAAGCAGCTTTCAATCTCTCCA CCATCTCCTTTGATGAAGGTTACAGCCCTCTCTTTGGCGATGGCAATCTTGTTCGCTCTCCTGATGGTAGAAGCGCCCGCCTCCTCCTTGATCGCTTCAC AGGTGCGGGTTTTATTTCATCCAGGATGTATAAATATGGATTCTTTAGTGCGAATATCAAGTTACCAGGCTATTACACGGCCGGTCTCTGTGTTGCCTTT TATACATCGAACGGGGACGTGTTCAAGAAGACCCATGATGAATTGGACATTGAATTCCTGGGAAACACCAAAGGGGAGCCATGGAGGTTCCAAACAAACT TGTATGGTAATGGAAGCACAAGTCATGGCAGAGAAGAAAGATATCGATTGTGGTTTGACCCCTCCAAAGAGTTCCATAGGTATAGCATTCTATGGACGGC AAAGAACATCATATTCTACATTGACGATGTTCCCATCCGAGAGGTGATTCGCAATGAAGAAATGGGCAGCGAGTTCCCATCGAAGCCAATGTCCTTGTAT GCTACGATATGGGATGCGTCGAATTGGGCAACTTCTGGTGGGAAATACAAGGTCAATTATAAGTATGCACCATTTGTGTCCGAATTTAAGGACTTGGCTC TCGAGGGCTGCCCTTCTGACCCCATCGAGGAATTTCCTTCATTTGATTGCTATGAGAGTGATATTGCTAGGCTCGAGAATGCCGATTATGCCACGATCAC GCGGAGGCAACGTTCGGCAATGCGGCGATTCCGCCAACGTTACATGTATTATTCTTATTGCTATGATGCATTAAGGTATCCTGTGCCACTACCAGAATGT GTTATAATTCCATCAGAGAAGGAGAGATTCAGGGACACTGGCAGATTGAAATTCGGTGGCAGCCATCAAGGTGGCAAACGCCGTTCAAGGCGCCGAGGCC GAGGCCGAGTTCAAGCTTCTAATTTAGAATATGATCCGGATATGTGA
AA sequence Show only first row Show all	>Potri.003G097300.1 pacid=42785464 polypeptide=Potri.003G097300.1.p locus=Potri.003G097300 ID=Potri.003G097300.1.v4.1 annot-version=v4.1 MDCLCCWSVSKPLYLLLFFYFFSCTAKAAFNLSTISFDEGYSPLFGDGNLVRSPDGRSARLLLDRFTGAGFISSRMYKYGFFSANIKLPGYYTAGLCVAF YTSNGDVFKKTHDELDIEFLGNTKGEPWRFQTNLYGNGSTSHGREERYRLWFDPSKEFHRYSILWTAKNIIFYIDDVPIREVIRNEEMGSEFPSKPMSLY ATIWDASNWATSGGKYKVNYKYAPFVSEFKDLALEGCPSDPIEEFPSFDCYESDIARLENADYATITRRQRSAMRRFRQRYMYYSYCYDALRYPVPLPEC VIIPSEKERFRDTGRLKFGGSHQGGKRRSRRRGRGRVQASNLEYDPDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.003G097300 [exp]	0	1	Pt-XTR4.1
AT3G51730			saposin B domain-containing pr...		Potri.016G133400 [exp]	7.74	0.7938
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	10.39	0.7160
AT3G22260			Cysteine proteinases superfami...		Potri.006G021700 [exp]	15.96	0.6861
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Potri.001G139400 [exp]	19.33	0.6900	NHL8.1
AT4G21215			unknown protein		Potri.011G026900 [exp]	30.29	0.6860
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.006G119200 [exp]	32.86	0.6965
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	34.64	0.6812	Pt-ATHB.4
AT2G36330			Uncharacterised protein family...		Potri.015G075100 [exp]	36.33	0.6767
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.001G075600 [exp]	38.15	0.6605
AT5G41350			RING/U-box superfamily protein...		Potri.001G101700 [exp]	47.05	0.6480

Compare expression of checked genes

Potri.003G097300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.