Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35530 447 / 2e-156 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 422 / 9e-147 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT2G46270 99 / 7e-23 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 87 / 1e-18 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT4G36730 68 / 2e-12 bZIP GBF1 G-box binding factor 1 (.1.2) AT3G30530 62 / 2e-11 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G38800 62 / 4e-11 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT1G13600 62 / 7e-11 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G15830 61 / 1e-10 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G75390 60 / 2e-10 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136000 [exp] 716 / 0 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.005G126000 [exp] 187 / 1e-55 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.007G029400 [exp] 186 / 3e-55 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.002G167100 [exp] 99 / 1e-22 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 91 / 5e-20 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.004G111100 [exp] 65 / 4e-12 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 61 / 8e-11 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.017G106700 [exp] 60 / 3e-10 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.010G135200 [exp] 59 / 6e-10 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014324 [exp] 177 / 4e-52 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 158 / 3e-44 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10003034 [exp] 149 / 2e-40 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10005146 [exp] 149 / 3e-40 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10041720 [exp] 142 / 7e-39 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10024030 [exp] 120 / 2e-30 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10029101 [exp] 62 / 1e-10 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 62 / 1e-10 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10024279 [exp] 56 / 2e-09 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10003255 [exp] 56 / 4e-08 AT1G19490 194 / 2e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF07777 [poplar] [flax] MFMR G-box binding protein MFMR CL0018 [poplar] [flax] PF16596 [poplar] [flax] MFMR_assoc Disordered region downstream of MFMR
Representative CDS sequence Show only first row Show all	>Potri.003G097600.1 pacid=42784765 polypeptide=Potri.003G097600.1.p locus=Potri.003G097600 ID=Potri.003G097600.1.v4.1 annot-version=v4.1 ATGGGTAGCAGTGATATGGATAAAACAGGAAAGGAGAAGGAGGCCAAGACACCATCTGCTGCTTCTACACAGGAACAGCCTTCAACTGCCGGTGCTGCCA CTGTAAATCCAGACTGGTCTGGGTTTCAGGCCTATTCTCATATACCTCCACCAGGGTTCTTGGCATCAAGTCCCCAAGCTCACCCATATATGTGGGGGGT TCAGCACATTATGCCTCCCTATGGTACCCCACCACATCCATATGTTGCAATGTATCCTCACGGTGTATATGCTCATCCGTCCATTCCCCCGGGTTCTTAT CCTTTTAGTCCTTTTGCAATGCCTTCTCCAAATGGTATCGCTGAGGTTTCTGGAAACACTCCTGGCAGCATGGAAGCCGAAGGAAGACCATCTGATGCCA AGGAAAAATTACCTATTAAAAGGTCCAAAGGAAGCTTGGGCAGTTTAAACATGATTACTGGGAAGAATAATGAGCATGGGAGAACAACAGGAGCATCTGC TAATGGAGCTTATTCGAAAAGTGCTGAGAGTGGAAGTGAAGGCACAAGTGAAGGAAGTGATGCGGATTCTCAGAGTGACTCACAAATGAAGTCAGGTGGC AGACAAGATTCTCTGGAAGAAACATCTCAGAATGGTGGTTCTGCACATGCTGCTCAGAATGGAGGACAGGGTGCATCTACAATCATGAATCAAACAATGG GTGTCCTGCCAATATCTGCTGCCAGTGCCCCTGGAGTTATACCTGGTCCCACAACCAACTTAAATATTGGAATGGACTATTGGGGAGCCCCTGTTGCTTC TAGTGTTCCTGCAATTCGTGGGAAGGTTCCTTCTACTCCAGTTGCTGGAGGGATTGCTACTGCTGGATCACGGGATGGTGTTCAATCGCAGCATTGGTTA CAGGATGAAAGAGAGCTTAAGAGACAGAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGCCGGTCCAGGTTGCGTAAACAGGCTGAATGCGATGAGCTGG CCCAACGTGCTGAAGTTTTAAAAGAAGAAAATGCCAATCTTAGATCAGAAGTAAATCGGATCAAGAGCGAGTATGAGCAGCTTCTTGCAGAGAACGCCTC TCTCAAGGAGAGGCTCGGGGAAGTTCATGGACAAGAAGATTCCAGGGCTGGCAGGAATGACCAACATACGAGCAATGATACACAACAGACTGGACAAACA TAG
AA sequence Show only first row Show all	>Potri.003G097600.1 pacid=42784765 polypeptide=Potri.003G097600.1.p locus=Potri.003G097600 ID=Potri.003G097600.1.v4.1 annot-version=v4.1 MGSSDMDKTGKEKEAKTPSAASTQEQPSTAGAATVNPDWSGFQAYSHIPPPGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGVYAHPSIPPGSY PFSPFAMPSPNGIAEVSGNTPGSMEAEGRPSDAKEKLPIKRSKGSLGSLNMITGKNNEHGRTTGASANGAYSKSAESGSEGTSEGSDADSQSDSQMKSGG RQDSLEETSQNGGSAHAAQNGGQGASTIMNQTMGVLPISAASAPGVIPGPTTNLNIGMDYWGAPVASSVPAIRGKVPSTPVAGGIATAGSRDGVQSQHWL QDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENANLRSEVNRIKSEYEQLLAENASLKERLGEVHGQEDSRAGRNDQHTSNDTQQTGQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	0	1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	4.24	0.8468
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	6.24	0.8429
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	7.21	0.8436
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	8.36	0.8405
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	14.42	0.8412
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	18.33	0.8341
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	21.81	0.8124
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	24.73	0.7792
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.005G202000 [exp]	25.00	0.8133
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.015G138500 [exp]	27.05	0.7564

Compare expression of checked genes

Potri.003G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.