Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35540 235 / 5e-69 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 169 / 6e-45 Domain of unknown function (DUF3444) (.1) AT2G05230 165 / 5e-43 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 165 / 5e-43 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 158 / 1e-40 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 157 / 2e-40 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 127 / 5e-30 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 120 / 7e-28 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 118 / 2e-27 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 116 / 2e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171200 [exp] 184 / 2e-49 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 184 / 3e-49 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 177 / 2e-47 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 174 / 6e-46 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 172 / 2e-45 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 171 / 4e-45 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 170 / 2e-44 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 165 / 5e-43 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 150 / 1e-37 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039019 [exp] 313 / 5e-99 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 312 / 1e-98 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 175 / 1e-46 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 168 / 2e-44 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 156 / 7e-40 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 156 / 9e-40 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10008983 [exp] 149 / 1e-37 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 147 / 4e-37 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 142 / 7e-35 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 138 / 1e-33 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.003G097800.7 pacid=42785932 polypeptide=Potri.003G097800.7.p locus=Potri.003G097800 ID=Potri.003G097800.7.v4.1 annot-version=v4.1 ATGGGAACGAAGGCAGATCAAGAAGAAGAAGCAAGGCGTCTCAAAACAATAGCAGAGACTAAATTTACCAACTCCAACCTCAAATCAGCCCTCAAGCACG CCAAGAAAGCCCACCGTCTCTCTCCAAAACTCGAAGGTCTCTCTTCAATGCTGACAGCCTTGAAGACTCTCCGTGTCGCCTCCAAGACCCAAAATTCAGA CATCACTGACTGGTACAAGATTCTCCAGGTAGAACCCTTCTCTCATATGAACAGTATTAAGAAACAATACAAGAAACTAGCTTTAGTCTTACACCCTGAT AAGAACCCATTTTTAGGATGCGAAGAGGCATTTAAGCTTGTTGCTGAGGGGTTTAGAGTCTTGTCTGATAAGATTAGGAGGAAAGAGTATGATTTGAGGT TAAGGATACGGCTTCAGGACGAGAGGGTTAGTGATAATTCTGCTGTGGAGACCTTTTGGACTGCCTGTTCGCGGTGTAGGCTTTTGCATCAGTTTGAGAG ACAGTATTTGGGGCATAATTTGGTGTGTCCTAGTTGTAAGAAGAGTTTTGAGGCTGTTGAGGTAAAAGGAGGGGATAAAAAGGATGCTGAGGTTGGAGTT TGGAGTGAGAGGCTAAGGAGGAAAGATATTGGTGGTAAGGGAATTGGGGGTTTGAGTTCCGGGGAAGGGGTCAGTGCGGGGTCGAGGAGAGAATTGGATG CTGAAAGTGCAGGAGGCGTGAATTTGAAGGGGAATGAAGTAATTTCTGGAGAATGGGGTGGTGGGAAATTGAGGACCGGGGGTTTGAGGAGGAGAACGAG TACTGTTGGTGAGGTTTTGGAGAGATCAAAGAAGAGGGTGAAGTTTTCTGATGAAACGATGACATTAGCAGAAATGAAGTTGGAAGCAAAGAAAAAGGCG AGTCAAAAGGTGGAATTGAAGGAGAAGCAAAAGGATGTTGGGGAAAAGGAGAAGAAGAAGGAGAAGCAGAAGGTGATGGAGAAGGGGAAGGGGAAGGGGA AGGAAACATGTCTAGTCTTGAACAAGAGCACGGATTTGGAGACTGAAAAAGGTGGAGCATCAAAGAAGAGTGGGGATACGGAAATCAAGACAAGGGAAGG TGTAAAGACAAGTAGAAAAATGGAAATCATGAGGCAAGGAGCATCAAAGAAGAGTGCGAGTTTGCAAATGGAGAGGCACAAGAATTCAAGGGGGGATTTG GACAGCATGGCAGTGGAGTATTCAAATTTCTTTGATTTTGATAGTGATAGAGTGGAGAGGAGGTTTAAGAAAGGGCAAGTTTGGGCTATTTATGACGATG ATGGAATGCCGAGACATTATGGTTTGATTGATGAAGTTGTTTCAGTGAATCCCTTTAAGGTGAACTTGAGTTGGTTGGATCTTCAAAGGTATGGAGACGA GGTGTTAATTTGGGAGAAAATGGGTCTTCATGTATCTTGTGGTAGATTTAAGGTTGCCAGGACGATGATAATTGACTCTGTTAATATCTTTTCACATGCT GTGGAATGTGAAAGGGAAGCAAGGGAAGTTTATAGGATTTATCCTAAGAAGGGTTCTGTGTGGGCACTTTATAATAAAGCAACTTTAGGTGCTGAAGGAA GAAATCTGTCAGCTAGTGATGAGCGATGCCATGACATTGTTGTGCTGTTAACCACTTACAGTGAGATGCATGGATTGAGCATGGCCTCCCTTGAGAAGGT TGATGGGTACAAGACTGTATTTAAGAGACGAGAGATTGGGTGCCATGCTGTTAGATTGCTTGAAAAAGATGATATTTGGTTGTTTTCACATCAGATTCCT TCAAGGAAGTTTTCTGGTGACGAGGTTGCTGACAATTTAAAGGACTGTTGGGAACTTGATCCTGCTTCACTTCCTTCAAATTTGCTTACTGTTGGTGGGG AAGCTGACATTGAGTAG
AA sequence Show only first row Show all	>Potri.003G097800.7 pacid=42785932 polypeptide=Potri.003G097800.7.p locus=Potri.003G097800 ID=Potri.003G097800.7.v4.1 annot-version=v4.1 MGTKADQEEEARRLKTIAETKFTNSNLKSALKHAKKAHRLSPKLEGLSSMLTALKTLRVASKTQNSDITDWYKILQVEPFSHMNSIKKQYKKLALVLHPD KNPFLGCEEAFKLVAEGFRVLSDKIRRKEYDLRLRIRLQDERVSDNSAVETFWTACSRCRLLHQFERQYLGHNLVCPSCKKSFEAVEVKGGDKKDAEVGV WSERLRRKDIGGKGIGGLSSGEGVSAGSRRELDAESAGGVNLKGNEVISGEWGGGKLRTGGLRRRTSTVGEVLERSKKRVKFSDETMTLAEMKLEAKKKA SQKVELKEKQKDVGEKEKKKEKQKVMEKGKGKGKETCLVLNKSTDLETEKGGASKKSGDTEIKTREGVKTSRKMEIMRQGASKKSASLQMERHKNSRGDL DSMAVEYSNFFDFDSDRVERRFKKGQVWAIYDDDGMPRHYGLIDEVVSVNPFKVNLSWLDLQRYGDEVLIWEKMGLHVSCGRFKVARTMIIDSVNIFSHA VECEREAREVYRIYPKKGSVWALYNKATLGAEGRNLSASDERCHDIVVLLTTYSEMHGLSMASLEKVDGYKTVFKRREIGCHAVRLLEKDDIWLFSHQIP SRKFSGDEVADNLKDCWELDPASLPSNLLTVGGEADIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.001G082100 [exp]	1.41	0.9337
					Potri.005G043750 [exp]	2.82	0.9180
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	4.00	0.9109
AT5G27230			Frigida-like protein (.1)		Potri.005G043900 [exp]	4.24	0.9176
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	5.65	0.8915
AT5G27230			Frigida-like protein (.1)		Potri.005G044000 [exp]	6.00	0.8881
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	6.92	0.8982
AT3G58110			unknown protein		Potri.019G091700 [exp]	8.94	0.8587
					Potri.003G148601 [exp]	10.24	0.9038
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.010G217600 [exp]	12.12	0.8105

Compare expression of checked genes

Potri.003G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.