Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G124500 [exp] 85 / 2e-20 AT1G73325 61 / 4e-11 Kunitz family trypsin and protease inhibitor protein (.1) Potri.019G122100 [exp] 84 / 8e-20 AT1G73325 61 / 3e-11 Kunitz family trypsin and protease inhibitor protein (.1) Potri.010G007700 [exp] 72 / 2e-15 AT1G73325 62 / 1e-11 Kunitz family trypsin and protease inhibitor protein (.1) Potri.019G124750 [exp] 70 / 7e-15 AT1G73325 57 / 4e-10 Kunitz family trypsin and protease inhibitor protein (.1) Potri.019G124400 [exp] 70 / 9e-15 AT1G73325 56 / 2e-09 Kunitz family trypsin and protease inhibitor protein (.1) Potri.019G124432 [exp] 69 / 1e-14 AT1G73325 57 / 4e-10 Kunitz family trypsin and protease inhibitor protein (.1) Potri.010G010111 [exp] 68 / 4e-14 AT1G17860 57 / 4e-10 Kunitz family trypsin and protease inhibitor protein (.1) Potri.010G007911 [exp] 68 / 4e-14 AT1G17860 57 / 4e-10 Kunitz family trypsin and protease inhibitor protein (.1) Potri.010G007800 [exp] 68 / 4e-14 AT1G17860 57 / 4e-10 Kunitz family trypsin and protease inhibitor protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039210 [exp] 60 / 6e-11 AT1G17860 179 / 4e-57 Kunitz family trypsin and protease inhibitor protein (.1) Lus10022302 [exp] 56 / 3e-09 AT1G17860 176 / 4e-54 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007902 [exp] 54 / 1e-08 AT1G17860 162 / 3e-50 Kunitz family trypsin and protease inhibitor protein (.1) Lus10042301 [exp] 53 / 1e-08 AT1G17860 182 / 2e-58 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007890 [exp] 53 / 2e-08 AT1G17860 166 / 7e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007892 [exp] 53 / 2e-08 AT1G17860 163 / 1e-50 Kunitz family trypsin and protease inhibitor protein (.1) Lus10039209 [exp] 53 / 2e-08 AT1G17860 179 / 6e-57 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013730 [exp] 52 / 4e-08 AT1G17860 175 / 2e-55 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013732 [exp] 52 / 5e-08 AT1G17860 166 / 4e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013731 [exp] 52 / 5e-08 AT1G17860 172 / 5e-53 Kunitz family trypsin and protease inhibitor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF00197 [poplar] [flax] Kunitz_legume Trypsin and protease inhibitor
Representative CDS sequence Show only first row Show all	>Potri.003G097900.2 pacid=42785409 polypeptide=Potri.003G097900.2.p locus=Potri.003G097900 ID=Potri.003G097900.2.v4.1 annot-version=v4.1 ATGAAGATCCCTAAGCTGATGTTCTCCTTCCTTCTCTTTGCCTTGACAGCAATATCATTTCAAAGGGCCATTGATGCTCAAGGTCCCAAAGAAGCGGTGG TTGATTCAAATGATAACGAGGTTCTCCTGGGTTTAGATTATTACATCGCAGTCACCAGTCCATTTGACGGGATGTCTCTAGCCATGGAAGCCAGCTGCCC ACCTCCTGTTGTGCACAGGAACAATCTCTCTTTGCTTCCGATAAAATTCTCATCGGTGGTTGATTCCAATGACAATGTGGTCCGAGAAGACACTAGTCTG AACTTGGAGTTCAATGTCGAGCTCAACAACAGTGATTGTAACGTGCCGACCATTTGGAAAGTTGAGTTTAATGCATCCATGCAACAATGGCTGGTTATGA TCGGTGGGGATCGAAGTCATAATCGGTTTCAGATTGCCAAGGCATGCCCATATAGAAAATATTTCTATCAGCTTCGTTACTGCCCGGTTCTCGGGTCCAT CCAATTCCCTTGCGTTACAGTTCGCTCTCTTTTCAAGAATGGATTAAACTATCTGGCTCTCAATGGCGATCCTATAGCAATTGTGCTGGGGCAGCTTGTA TCTTCAACATGA
AA sequence Show only first row Show all	>Potri.003G097900.2 pacid=42785409 polypeptide=Potri.003G097900.2.p locus=Potri.003G097900 ID=Potri.003G097900.2.v4.1 annot-version=v4.1 MKIPKLMFSFLLFALTAISFQRAIDAQGPKEAVVDSNDNEVLLGLDYYIAVTSPFDGMSLAMEASCPPPVVHRNNLSLLPIKFSSVVDSNDNVVREDTSL NLEFNVELNNSDCNVPTIWKVEFNASMQQWLVMIGGDRSHNRFQIAKACPYRKYFYQLRYCPVLGSIQFPCVTVRSLFKNGLNYLALNGDPIAIVLGQLV SST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.003G097900 [exp]	0	1
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.001G183500 [exp]	5.56	0.8619
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G078400 [exp]	11.31	0.8140	UF3.3
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	17.66	0.8504
AT4G35730			Regulator of Vps4 activity in ...		Potri.007G059800 [exp]	37.34	0.8470
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.006G249500 [exp]	38.15	0.7858
AT1G31335			unknown protein		Potri.003G148100 [exp]	45.60	0.8415
AT3G14060			unknown protein		Potri.003G067200 [exp]	48.46	0.7892
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	48.88	0.8370
AT1G03820			unknown protein		Potri.007G137001 [exp]	53.11	0.8342
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.012G128000 [exp]	53.44	0.8042

Compare expression of checked genes

Potri.003G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.