Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68310 257 / 2e-89 AE7 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) AT3G50845 191 / 2e-63 Protein of unknown function (DUF59) (.1) AT3G09380 170 / 6e-55 Protein of unknown function (DUF59) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G135800 [exp] 284 / 5e-100 AT1G68310 243 / 8e-84 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.005G123100 [exp] 204 / 3e-68 AT3G50845 237 / 2e-81 Protein of unknown function (DUF59) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031006 [exp] 258 / 1e-89 AT1G68310 233 / 1e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035403 [exp] 254 / 4e-88 AT1G68310 230 / 7e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035404 [exp] 234 / 2e-79 AT1G68310 199 / 8e-66 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10014311 [exp] 201 / 6e-67 AT3G50845 253 / 1e-87 Protein of unknown function (DUF59) (.1) Lus10026019 [exp] 200 / 8e-67 AT3G50845 253 / 9e-88 Protein of unknown function (DUF59) (.1) Lus10031007 [exp] 73 / 2e-17 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [poplar] [flax] NifU PF01883 [poplar] [flax] FeS_assembly_P Iron-sulfur cluster assembly protein
Representative CDS sequence Show only first row Show all	>Potri.003G098000.2 pacid=42786773 polypeptide=Potri.003G098002.1.p locus=Potri.003G098000 ID=Potri.003G098000.2.v4.1 annot-version=v4.1 ATGGTCTCTGGGCTAATCAACGCTAATCCAGTAATTTATGAGAAGAAGGAGAGACGGGTTCGAAGTGCTCCAAGTGTTGGTGATGATGAGCATGCTGTTG AGCCTATTGATCAACTTGAAGTTTTTGATCATATTAGAGACATAAAGGATCCGGAGCATCCTTACTCTTTGGAAGAGCTTAAAGTGATAACGGAGGATGC GATTGAAGTAGATGACAATCACAGTTATGTCAGGGTGACATTCACTCCAACAGTTGAACATTGTAGCATGGCAACAGTCATTGGTCTTTGCTTGAGAGTG AAACTTATGAGAAGCCTGCCACAACGTTACAAGGTGGATATCAGGGTTGCACCAGGAACTCATGCAACTGAATCTGCAGTTAATAAACAACTAAATGATA AAGAGCGAGTAGCTGCAGCATTGGAAAACCCAAACCTGGTGGATATGGTCGACGAATGTTTGGCTCCATCATATGCGTGA
AA sequence Show only first row Show all	>Potri.003G098000.2 pacid=42786773 polypeptide=Potri.003G098002.1.p locus=Potri.003G098000 ID=Potri.003G098000.2.v4.1 annot-version=v4.1 MVSGLINANPVIYEKKERRVRSAPSVGDDEHAVEPIDQLEVFDHIRDIKDPEHPYSLEELKVITEDAIEVDDNHSYVRVTFTPTVEHCSMATVIGLCLRV KLMRSLPQRYKVDIRVAPGTHATESAVNKQLNDKERVAAALENPNLVDMVDECLAPSYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.003G098000 [exp]	0	1
AT1G65000			unknown protein		Potri.013G078866 [exp]	2.00	0.8821
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.014G168900 [exp]	2.82	0.8616
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.010G063100 [exp]	2.82	0.8282
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	3.00	0.8272	LSD1.2
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Potri.017G030000 [exp]	4.58	0.8587
AT1G57540			unknown protein		Potri.005G002900 [exp]	5.00	0.8433
AT1G05785			Got1/Sft2-like vescicle transp...		Potri.014G151000 [exp]	5.29	0.8344
AT1G65032			unknown protein		Potri.005G094100 [exp]	6.32	0.8259
AT3G62450			unknown protein		Potri.005G071700 [exp]	7.14	0.8077
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.015G077500 [exp]	7.34	0.8433

Compare expression of checked genes

Potri.003G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.