Plant FIBer expression Database

Potri.003G098100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31910 684 / 0 GHMP kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G135500
[exp]
823 / 0 AT1G31910 593 / 0.0 GHMP kinase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012121
[exp]
719 / 0 AT1G31910 691 / 0.0 GHMP kinase family protein (.1.2)
Lus10010422
[exp]
718 / 0 AT1G31910 690 / 0.0 GHMP kinase family protein (.1.2)
Lus10012122
[exp]
630 / 0 AT1G31910 605 / 0.0 GHMP kinase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF00288 GHMP_kinases_N GHMP kinases N terminal domain
CL0677 GHMP_C PF08544 GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence
>Potri.003G098100.3 pacid=42784949 polypeptide=Potri.003G098100.3.p locus=Potri.003G098100 ID=Potri.003G098100.3.v4.1 annot-version=v4.1
ATGGCTGTAGTTGCTTCTGCTCCTGGTAAGGTTTTGATGACTGGGGGTTACCTCATATTGGAGAGACCTAATGCTGGAGTTGTTTTAAGCACAAATGCTC
GTTTCTATGCCATTGTTAAACCTCTTTATGAAGAAATGAAGCCTGATAGCTGGGCCTGGGCTTGGACTGATGTTAGATTAACATCTCCCCAACTCTCCAG
AGAAAGCATGTATAAATTGTCACTGAAGAATTTAATGCTTCAGTGTGTCTCTTCAAGTGAATCAAGGAACCCTTTTGTGGAGCAAGCGGTACCATATGCC
ATAGCAGCTGCACATGCTTTATTTGACGAAGATAAGAAGGATGCCTTACACAAGCTACTCTTGCAAGGCCTTGATATCACAATTTTAGGTTGCAATGACT
TCTATTCATACAGAAATCAGATTGAAGCACGTGGACTCCCTTTGACACCAGAATCATTGGCAGCTCTTCCTCCTTTCACATCAATTACCTTCAATGCAGA
AGAAGAAAATGGACAGAATTGCAAGCCTGAAGTTGCAAAAACTGGTTTGGGTTCATCTGCAGCAATGACCACTGCTGTGGTTGCTGCTCTGCTTCATTAC
CTTGGAGTGGTTGATCTTTCACCCGTGTCTAAAAATGAGGGATCTGCTGATCTTGATGTGGTGCATATTATTGCTCAAACTGCTCATTGTATTGCACAAG
GGAAAATTGGAAGTGGTTTTGATGTCAGTTCTGCAGTTTATGGAAGTCACCGTTATGTCCGCTTTTCACCAGATGTTCTTTCTTCTGCTCAGGATGCATT
GAATGGAACACCATTACAGGAAGTCATGGCTGCCATCCTAAAAGGAAAGTGGGACCATGAGAGGACCAAGTTTTCTTTGCCCCCATCGATGAACCTTTTA
TTAGGAGAACCAGGGACTGGAGGATCATCCACGCCATCAATGGTAGGTGCTGTGAAAAGGTGGCAGAAATCTGACCCTGCAAAGGCCCAAGAAACATGGA
GAAAGTTGTCAGAGGCAAATTCAAAACTTGAAATCCAATTCAATATTTTAAGCAAGCTTGCAGAAGAGAATTGGAATGCTTACAAATGTGTACTAGACAT
TTGCAGCAAGCAAAGGTCAGAGAAGTGGATAGAACAATCCACCGAACCTAGCCAAGAAGCAGTTGTTAAAGCATTGTTAGGAGCAAGAAGTGCCATGGTT
GAGATCAGAAATCTGATGCGCCAGATGGGCGAGGCTGCAGGTGTCCCGATAGAGCCTGAATCACAGACTCGACTTTTGGATGCTACTATGGACATGGAAG
GAGTTTTGCTGGCAGGAGTTCCTGGAGCAGGTGGATTCGATGCCGTCTTTGCTGTAACCTTAGGGGACTCTGGCAGCAATGTCGCCAAAGCTTGGAGTTC
TCTCAATGTTCTGGCCTTGTTAGTCAGAGAAGACCCACATGGTGTTTCTTTAGAAACTGGTGATCCAATAACCAAGGAAATCACAGCAGCTGTGTCTGCA
GTTCATATTGAGTGA
AA sequence
>Potri.003G098100.3 pacid=42784949 polypeptide=Potri.003G098100.3.p locus=Potri.003G098100 ID=Potri.003G098100.3.v4.1 annot-version=v4.1
MAVVASAPGKVLMTGGYLILERPNAGVVLSTNARFYAIVKPLYEEMKPDSWAWAWTDVRLTSPQLSRESMYKLSLKNLMLQCVSSSESRNPFVEQAVPYA
IAAAHALFDEDKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPESLAALPPFTSITFNAEEENGQNCKPEVAKTGLGSSAAMTTAVVAALLHY
LGVVDLSPVSKNEGSADLDVVHIIAQTAHCIAQGKIGSGFDVSSAVYGSHRYVRFSPDVLSSAQDALNGTPLQEVMAAILKGKWDHERTKFSLPPSMNLL
LGEPGTGGSSTPSMVGAVKRWQKSDPAKAQETWRKLSEANSKLEIQFNILSKLAEENWNAYKCVLDICSKQRSEKWIEQSTEPSQEAVVKALLGARSAMV
EIRNLMRQMGEAAGVPIEPESQTRLLDATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVAKAWSSLNVLALLVREDPHGVSLETGDPITKEITAAVSA
VHIE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31910 GHMP kinase family protein (.1... Potri.003G098100
[exp]
0 1
AT1G68760 ATNUDX1, ATNUDT... NUDIX HYDROLASE 1, ARABIDOPSIS... Potri.008G114400
[exp]
3.46 0.7016
AT1G19360 RRA3 reduced residual arabinose 3, ... Potri.002G134400
[exp]
10.48 0.6397
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Potri.011G134200
[exp]
12.12 0.6132 SUBI.9
AT5G59800 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CP... Potri.009G027600
[exp]
45.49 0.5064 MBD906
AT5G35110 unknown protein Potri.018G113700
[exp]
45.49 0.5897
AT4G09900 ATMES12 ARABIDOPSIS THALIANA METHYL ES... Potri.019G077400
[exp]
51.53 0.4944
AT1G70780 unknown protein Potri.008G131600
[exp]
51.74 0.5826
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Potri.005G105700
[exp]
59.51 0.5596
AT1G79750 ATNADP-ME4 Arabidopsis thaliana NADP-mali... Potri.001G189700
[exp]
65.49 0.5608
Potri.004G202600
[exp]
67.74 0.4937

Potri.003G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.