Plant FIBer expression Database

Potri.003G098700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45610 311 / 2e-96 SUV2 SENSITIVE TO UV 2, protein dimerizations (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G134800
[exp]
1059 / 0 AT5G45610 203 / 3e-56 SENSITIVE TO UV 2, protein dimerizations (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012118
[exp]
434 / 3e-143 AT5G45610 286 / 2e-87 SENSITIVE TO UV 2, protein dimerizations (.1)
Lus10010424
[exp]
402 / 3e-130 AT5G45610 253 / 8e-75 SENSITIVE TO UV 2, protein dimerizations (.1)
PFAM info
Representative CDS sequence
>Potri.003G098700.2 pacid=42786005 polypeptide=Potri.003G098700.2.p locus=Potri.003G098700 ID=Potri.003G098700.2.v4.1 annot-version=v4.1
ATGAAAGAAGAAGAAGAAGAAGAGGAGGAGGAAGGGTTTGAAGAATGGGGCGCTGATTTCTTAGAACAATTGATCCAAGTCGAAGAACACGCTCTTTCTT
CTCAACTCCCCTCCTCCATATCCCCCCCTTCCACCACCACCACCAAACTCTCCTACCTCCCACCACCAGTACAACCACCGCAACAACAACAACACCAAGA
TTATCAAAATAATTCCATCAGTTACTCTCCTCCTCGAGAACTCTCTCAAAGACCAATCGAGTTCGGTATCAACTACAATAACAGCATGACGTTTGATGGT
TTTTCTAACCAATTCTCGCATTCCGCTCCTTCTACTTCCGTCTCCAACGATAATGCAAGAGACCTGGAAATTGATCGCTTAAAGAGAGAATTGGGCCGCG
TATCAAAGCACCTTACAAATTTGGAAAAAGAATGCTTTGAACTTAAGAAGGAGAGAAGAAAAAAAGATGACCAAATTAAATCTGCATATGCAAATATTGA
AGAAAAAGATATGGATGTTCACAGCCGAAAAAAGACGAATTTTGGCAGGGAACATGGGTTTCACAGCAAGGATGTTCATGGAATTTCCCAGCACTCTAAA
AATGCAAAACCTTTGGAGGACCAGATTGATATAGCTTCTACGTCCAAGGCCATAGGAGTTCAGACAGAGAGAAGCATTGATTTTACCAAAATAGACTTGA
ACAATGATTTATCTTCTCACCTTGAACTTTCCAAAACATTGCTGGGCATCTGGGGTTCCACAAGTGAACAACAATTAGGAAGAAATATGATCTCCAAGTT
GTTCATGGCCTGCCTGACAGATTTTCAGGTTCTTTTTGGGTGCATGAGCATGAATATGTCCTCTAGAGTACAAATGGACTATATGCCAGGTGAAAGCTCT
TCTCATGCAGCTTTGCAGTATCATTTGCGTTCTTTTCCGACATCTGAAGCTGCAAAAGTTTCTCATCTGTATTCTGTACTGACAAAGATCAATAATGGAG
TGCTACAGTTGGAAGCTTTGTTTAGATCTTTACTTGATCTTTGTGATGTTCCAAATGTTTCCATTCTTTCTAGTTCTTTACATATACTGCTCGTCTTTTT
GAAGTACCTATTGAGTTTGGGAACAAAATTGGGAGGGGACAATATCAAGATTGAGGGACTTTGCTCTGGGGGCAGCCTTGGAGGCCAAGATCTGTTTAGT
GTGGTCAGCCATGAGACATCTCATGTGGGCTGTAGTTCGCATGGGATCAGATCTTTTGATTTAAAACACCTGTGCAAGAAGCGATGCTGGAATGCTGACA
CATCATTGCTTCTTACTTCTGTAAACTGGGTTTCTTTGTTTGAACTGATGCTTCGGGTTGCTGTGAGCAATACAGAAGAATGTGTGAGACTGGAGGCAGT
CTCTATCATGAATGTGATTCTGATGAGTACTAATGCGTTTACACAGAGGGAAAAGTTTGGCCAATTACCAATTTTTGAAAGCATAGCACAATTGTTAAAA
AGGGAAGCTGGCTCACGTGTCCAAAAGGAAGCTCTCCATCTTCTATTCTTGTTGCTAAATTGTTCCAAGCTGTTGAGCATATTTTGCTCTGGTTGTAAAG
AGGCAGAGATTTCTGATTCCACAAATGACAAGAAAATTACTTCAACACCCAAAGGATTCAGTAGCACCCTTGAGGGCTTGGCAGAATGTATTGCATGCTC
TGGATATAGCCTACAGGATATTGAACTTCGCAAGCGGGCTATCATCATGCTGGCCTTTTTAGCCTCATCTGGAAAACCTGGGTTTGAAATTATGGTGACT
TGCAAATTACCTGGAGAGACAAACTTTCTTATGTTGATTTTGCAAGTGTTGGTGTCCGAAATGGATGTAGAAGCTTCTGCTGAGCCAGAAAGAAGCATCA
AAGCAAGGACATTGCTGATTCGGGAGGCACTGATATTACTTAATAGACTTGTGTCCAATCCTGGCTACTCGGCTATAGCGTTGCGTGTATTAACAGCTAG
AAGAGATATGGCTATTTTGACCATCGATATTGCAAACAGGTTGTCCCAAGAAGACCAGAGACACAGGCAATCTGATGTCCAAGGACATGTGAAAGAATCA
GAAATTGTTGAGTTAGGTCAGGTATTTAAGAAAAGGGTTTTTGCTTATCTAGGGGATAAAATGTCATAA
AA sequence
>Potri.003G098700.2 pacid=42786005 polypeptide=Potri.003G098700.2.p locus=Potri.003G098700 ID=Potri.003G098700.2.v4.1 annot-version=v4.1
MKEEEEEEEEEGFEEWGADFLEQLIQVEEHALSSQLPSSISPPSTTTTKLSYLPPPVQPPQQQQHQDYQNNSISYSPPRELSQRPIEFGINYNNSMTFDG
FSNQFSHSAPSTSVSNDNARDLEIDRLKRELGRVSKHLTNLEKECFELKKERRKKDDQIKSAYANIEEKDMDVHSRKKTNFGREHGFHSKDVHGISQHSK
NAKPLEDQIDIASTSKAIGVQTERSIDFTKIDLNNDLSSHLELSKTLLGIWGSTSEQQLGRNMISKLFMACLTDFQVLFGCMSMNMSSRVQMDYMPGESS
SHAALQYHLRSFPTSEAAKVSHLYSVLTKINNGVLQLEALFRSLLDLCDVPNVSILSSSLHILLVFLKYLLSLGTKLGGDNIKIEGLCSGGSLGGQDLFS
VVSHETSHVGCSSHGIRSFDLKHLCKKRCWNADTSLLLTSVNWVSLFELMLRVAVSNTEECVRLEAVSIMNVILMSTNAFTQREKFGQLPIFESIAQLLK
REAGSRVQKEALHLLFLLLNCSKLLSIFCSGCKEAEISDSTNDKKITSTPKGFSSTLEGLAECIACSGYSLQDIELRKRAIIMLAFLASSGKPGFEIMVT
CKLPGETNFLMLILQVLVSEMDVEASAEPERSIKARTLLIREALILLNRLVSNPGYSAIALRVLTARRDMAILTIDIANRLSQEDQRHRQSDVQGHVKES
EIVELGQVFKKRVFAYLGDKMS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.003G098700
[exp]
0 1
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
1.41 0.8855
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.018G065900
[exp]
5.29 0.8502
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.010G227100
[exp]
8.71 0.8273
AT3G51050 FG-GAP repeat-containing prote... Potri.005G118300
[exp]
10.95 0.7873
AT1G08190 ZIP2, ATVPS41, ... ZIGZAG SUPPRESSOR 2, vacuolar ... Potri.001G212700
[exp]
11.00 0.7870
AT5G19660 ATSBT6.1 ,ATS1P SITE-1 protease (.1) Potri.018G081400
[exp]
11.61 0.7885
AT1G08030 AQC1, TPST active quiescent center1, tyro... Potri.009G011400
[exp]
12.00 0.8275
AT4G16180 unknown protein Potri.010G146800
[exp]
12.24 0.7697
AT4G38270 GAUT3 galacturonosyltransferase 3 (.... Potri.004G206000
[exp]
18.76 0.7957
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.001G185050
[exp]
21.42 0.7479

Potri.003G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.