Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31970 726 / 0 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 390 / 3e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 382 / 5e-127 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 328 / 2e-104 DEAD box RNA helicase family protein (.1.2) AT3G01540 315 / 1e-99 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 315 / 1e-95 DEAD box RNA helicase family protein (.1) AT1G20920 295 / 3e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 292 / 2e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 285 / 3e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 284 / 1e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038300 [exp] 371 / 7e-123 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 374 / 1e-122 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 370 / 5e-121 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 327 / 2e-102 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 321 / 2e-100 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 317 / 4e-96 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G003600 [exp] 297 / 1e-88 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 293 / 1e-87 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 285 / 2e-86 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004552 [exp] 634 / 0 AT1G31970 572 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Lus10000894 [exp] 588 / 0 AT1G31970 555 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 376 / 1e-124 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 377 / 9e-124 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 372 / 3e-123 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043334 [exp] 372 / 7e-122 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032135 [exp] 322 / 3e-102 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 317 / 4e-100 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 319 / 2e-99 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 321 / 2e-97 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G098800.1 pacid=42785097 polypeptide=Potri.003G098800.1.p locus=Potri.003G098800 ID=Potri.003G098800.1.v4.1 annot-version=v4.1 ATGGGTAAAAAGATTCGAGAAGCCAATCTTAACGGCGAACCGATTGCCCAACAAGAAGCCGCAAATGGTCACAAATCAGATAAAAAGAAAAGGAAGGATA AAAACAAGAATCAAGAACCTGAATTCCAAGAGACACAAAAGGAACCAACTCTAAAGAGAAGGCTTGAGGAAACCCAAGACCAGGAAACCGTCAAGAAAGA AAAGAAGAAGAAGAAGCATGAAGAAGAGAAAGAAGGTGAAATCCATGAAGGGAAAGACAAAGAAAGTGAAAGTTTTCCAGAAAGTACCAAGAAAGATAAA AACAAGAAGAAAGAAAGCAAGAAACAGGAGGAAAATGGGAAAGAAAATGTAATTCATGAAGTGAAGGAGGAAGTACAGCCGCAAGACAGAGTAGTGGTGT CCGGAAAGGATACACAAGAGACAAAGTATGCGTCTTTAAAGTCTTTTGCTGAGGCGAAACTGCCTGATAATGTGTTGGAATGTTGCAAGAATTTCAAGAA TCCATCTCCTATCCAGGCTCATGCTTGGCCCTTTTTGTTTGATGGGCGTGATTTTATTGGGATTGCAAAAACTGGATCAGGTAAGACTTTGGCATTTGGG ATACCTGCAATAATGCATATTCTGAGCAAGCGAAAGGGGAAATCGACAAGGGGGGCAAATCCACTTTGCCTTGTGCTTGCTCCTACAAGAGAATTAGCTG ATCAAATTTCAGTTGTTTTACGTGATGCTGGGGAACCTTGCGGTGTGAGATCAGTTTGTATATATGGAGGAACTTCCAAAGGACCTCAAATCAAGTCTCT GAAGGCTGGCGTTGATATTGTCATTGGAACCCCTGGCCGTTTGAAGGATTTGATAGAAATGAATGTATTGCACCTTGCAGAGGTATCTTTTGTGGTTCTT GATGAAGCAGATAGAATGCTGGACATGGGATTTAGACAGGAAGTTCGTTCAATATTGAGCAACACATGTTCTGCTCGCCAAATGATAATGTTTAGCGCTA CATGGCCTTTAGATGTTCATAATTTGGCAGAAGAATATATGGACCCAAATCCTGTTAAGGTGGTTGTAGGTTCTGAAGATACAGCTGCCAACCATGATGT CATGCAGATTGTTGAGGTATTGGAGGACCATTTGCGTGATCAGCGTTTACTTGCTTTGCTAGAAAAATATCACAAATCTCAACAGAATAGAGTGTTGGTT TTTGCCTTGTACCAAAAGGAAGCGGAACGTCTTGATGGAATGCTAAGAAAAAGTGGGTGGAATGTTGTTTCTATTCATGGCAACAAAGCACAAGAACAAC GAACAAAGGCATTGTCATTATTCAAGAAGGGCAGCTGCCCTCTGATGGTTGCTACTGATGTGGCTGCTCGAGGATTGGATGTTCCAGATGTAGAAGTAGT AATCAACTATACCTTCCCACTCACCGCAGAGGATTATGTCCACAGAATTGGCAGGACTGGACGGGCTGGCAAGAAGGGTGTTGCTCACACATTTTTCACG CATCATAATAGGGGGCTCGCTGGAGAGTTGGTCAACATTCTTAGAGAAGCTGGGCAAATCGTGCCACCTGCCCTTTTGAAATTTGGCACTCATGTGAAGA AAAAGGAGTCCAAGCTCTATGGGGCTCATTTCAAAGAAATCTCTGCAGATGCTCCAAAGGCCAAGAAAATAACTTTCAACTCGGATGACGAAGATTAA
AA sequence Show only first row Show all	>Potri.003G098800.1 pacid=42785097 polypeptide=Potri.003G098800.1.p locus=Potri.003G098800 ID=Potri.003G098800.1.v4.1 annot-version=v4.1 MGKKIREANLNGEPIAQQEAANGHKSDKKKRKDKNKNQEPEFQETQKEPTLKRRLEETQDQETVKKEKKKKKHEEEKEGEIHEGKDKESESFPESTKKDK NKKKESKKQEENGKENVIHEVKEEVQPQDRVVVSGKDTQETKYASLKSFAEAKLPDNVLECCKNFKNPSPIQAHAWPFLFDGRDFIGIAKTGSGKTLAFG IPAIMHILSKRKGKSTRGANPLCLVLAPTRELADQISVVLRDAGEPCGVRSVCIYGGTSKGPQIKSLKAGVDIVIGTPGRLKDLIEMNVLHLAEVSFVVL DEADRMLDMGFRQEVRSILSNTCSARQMIMFSATWPLDVHNLAEEYMDPNPVKVVVGSEDTAANHDVMQIVEVLEDHLRDQRLLALLEKYHKSQQNRVLV FALYQKEAERLDGMLRKSGWNVVSIHGNKAQEQRTKALSLFKKGSCPLMVATDVAARGLDVPDVEVVINYTFPLTAEDYVHRIGRTGRAGKKGVAHTFFT HHNRGLAGELVNILREAGQIVPPALLKFGTHVKKKESKLYGAHFKEISADAPKAKKITFNSDDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	0	1
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	1.41	0.8909
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	2.44	0.8297
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	2.82	0.8609
AT3G16840			P-loop containing nucleoside t...		Potri.010G063600 [exp]	3.16	0.8430
AT3G02760			Class II aaRS and biotin synth...		Potri.019G071400 [exp]	3.46	0.8523
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.017G108100 [exp]	3.60	0.7868
AT1G69070			unknown protein		Potri.010G140100 [exp]	3.74	0.8287
AT3G01160			unknown protein		Potri.005G108800 [exp]	3.87	0.8524
AT5G66540			unknown protein		Potri.015G078500 [exp]	6.32	0.7942
AT1G50920			Nucleolar GTP-binding protein ...		Potri.009G054000 [exp]	6.92	0.7761

Compare expression of checked genes

Potri.003G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.