Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32060 691 / 0 PRK phosphoribulokinase (.1) AT3G27440 81 / 2e-16 UKL5 uridine kinase-like 5 (.1) AT3G27190 72 / 2e-13 UKL2 uridine kinase-like 2 (.1) AT1G55810 72 / 2e-13 UKL3 uridine kinase-like 3 (.1.2.3) AT5G40870 68 / 3e-12 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT4G26510 64 / 7e-11 UKL4 uridine kinase-like 4 (.1.2) AT1G26190 63 / 2e-10 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 56 / 4e-08 Phosphoribulokinase / Uridine kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134000 [exp] 819 / 0 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.017G071200 [exp] 88 / 1e-18 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.017G069600 [exp] 72 / 1e-13 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 71 / 6e-13 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 68 / 3e-12 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 67 / 9e-12 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.008G110500 [exp] 59 / 4e-09 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 57 / 1e-08 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 57 / 2e-08 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000674 [exp] 676 / 0 AT1G32060 667 / 0.0 phosphoribulokinase (.1) Lus10030949 [exp] 655 / 0 AT1G32060 633 / 0.0 phosphoribulokinase (.1) Lus10011060 [exp] 630 / 0 AT1G32060 624 / 0.0 phosphoribulokinase (.1) Lus10022289 [exp] 81 / 2e-16 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10016989 [exp] 79 / 2e-15 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10021310 [exp] 76 / 1e-14 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10035216 [exp] 74 / 7e-14 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10041569 [exp] 73 / 1e-13 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 72 / 2e-13 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10030570 [exp] 60 / 2e-09 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Potri.003G099400.3 pacid=42785446 polypeptide=Potri.003G099400.3.p locus=Potri.003G099400 ID=Potri.003G099400.3.v4.1 annot-version=v4.1 ATGGCAGTTTGCACGGTATACACTACGCAGTCCCTCAATTCAACTTGCTCAATCTCCACCCCAACAAAAACCCACTTGGGGTTTAACCAAAGACATGTGG TGTTCTATAGCACTAACAAGAAAACAACCAAGAGGGCTAGCAGTGCTGTGATAACCTGCTCAGCTGACACACAAACTGTTGTGATTGGCCTAGCAGCAGA CTCTGGGTGTGGTAAGAGTACCTTCATGAGGAGGTTAACAAGTGTTTTTGGAGGTGCAGCAGAGCCACCAAGAGGTGGCAATCCTGACTCGAACACACTC ATAAGCGACACTACAACTGTAATATGTTTAGACGATTATCACTCACTTGATAGGACTGGAAGGAAAGAGAAGGGTGTCACTGCGCTTGATCCAAGAGCCA ACAACTTTGATCTCATGTACGAGCAAGTAAAGGCTATCAAAGATGGGACTGCTGTTGAGAAACCAATTTACAATCATGTTACAGGTCTCTTGGATCCTCC TGAGCTTATTAAGCCTCCTAAGATTCTTGTCATTGAAGGTTTGCATCCAATGTATGACCAACGTGTGAGGGACCTCTTGGACTTCAGTATCTACTTGGAC ATTAGCAACGAGGTTAAATTTGCATGGAAAATTCAGAGGGATATGGCTGAGCGAGGACACAGTCTTGAAAGCATTAAAGCTAGTATTGAAGCACGCAAGC CGGATTTTGATGCTTATATTGATCCACAAAAGCAATATGCTGATGCTGTCATTGAAGTGCTGCCAACCCAACTCATTCCGGACGACAACGAGGGGAAGGT TTTAAGAGTTAAGCTGATCATGAAAGAAGGGGTGGAATTTTTCAGCCCTGTCTACTTGTTTGATGAAGGCTCTTCTATTTCATGGATCCCGTGTGGTAGG AAGCTCACCTGCTCTTACCCTGGCATCAAATTCTCCTATGGGCCCGACGCTTACTACGGCCATGAGGTGTCTGTACTGGAAATGGATGGGCAATTTGACA GATTAGATGAGCTCATCTATGTCGAAAGCCATCTAAGTAACATCTCTACCAAGTTCTATGGAGAAGTCACCCAGCAGATGTTGAAGCATGCTGATTTCCC CGGCAGCAACAACGGAACAGGTCTCTTCCAAACAATCGTCGGATTGAAAATAAGAGACCTCTTCGAGCAAATTGTTGCCAGCAGGGCCAAAACCCCAGTT GAAGCCACAAAAGCCTAA
AA sequence Show only first row Show all	>Potri.003G099400.3 pacid=42785446 polypeptide=Potri.003G099400.3.p locus=Potri.003G099400 ID=Potri.003G099400.3.v4.1 annot-version=v4.1 MAVCTVYTTQSLNSTCSISTPTKTHLGFNQRHVVFYSTNKKTTKRASSAVITCSADTQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTL ISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAIKDGTAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDQRVRDLLDFSIYLD ISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVEFFSPVYLFDEGSSISWIPCGR KLTCSYPGIKFSYGPDAYYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAKTPV EATKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	0	1
AT5G07020			proline-rich family protein (....		Potri.003G192800 [exp]	1.41	0.9891
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.013G117000 [exp]	2.00	0.9886
AT1G51080			unknown protein		Potri.008G004800 [exp]	2.00	0.9864
AT3G26070			Plastid-lipid associated prote...		Potri.001G209600 [exp]	2.44	0.9880
AT3G09050			unknown protein		Potri.006G096700 [exp]	2.82	0.9841
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	3.46	0.9854
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	4.12	0.9812	Pt-FFC.2
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	5.00	0.9859
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	5.91	0.9852	RBP29.1
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	6.24	0.9822

Compare expression of checked genes

Potri.003G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.