Plant FIBer expression Database

Potri.003G099600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32080 664 / 0 AtLrgB membrane protein, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010412
[exp]
643 / 0 AT1G32080 700 / 0.0 membrane protein, putative (.1)
Lus10012137
[exp]
625 / 0 AT1G32080 709 / 0.0 membrane protein, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04172 LrgB LrgB-like family
Representative CDS sequence
>Potri.003G099600.1 pacid=42785768 polypeptide=Potri.003G099600.1.p locus=Potri.003G099600 ID=Potri.003G099600.1.v4.1 annot-version=v4.1
ATGGCTACTCCTTTAGTCGCTCATTCCGTTCAGCTCTGTCATCACCACTCAAAACAATATTCTTTCAAATCACAATCACGTGTCAATAGGGATATCGGTA
CAAAAACACTACTTGGTGTTTACAATGGATTCCACAATGTATATAACCAATCTTATTTTCATAAGCCTTGGGCACCCATTAGAGTTCTTGAGCCTAATTC
AAGGTTCTTGCAAATGGGTCCTCAAGAAACCTGCTCTAGTCGAGGAATTTCCAAGAAATCTATGAGCTCAGAAGGCAGTACCAGTACTAGCTCTTCATCT
ATTTCTCAACAGGTGATTGGGATCTTGCATTTGCTTGTTTCACTTGGGATTATCCTTGCAATGGATAAGTTGTTGAAAAAGGCATTTGTGGCTGCTGCTA
TCAAGTTTCCAAGTGCTCTGTTTGGCATGTTCTGCATATTCTCAGTTTTAGTCATTCTTGATATAACTATTCCGGCTGCTGCAACAAGCTTAATGAACTT
CTTTCAGCCAGCACTGTTATTCATTCAGAGATGGCTTCCGTTGTTCTACGTTCCATCATTGGTTGTTTTGCCTCTCTCTGTTAAAGATATCCCTGCTGCA
TCAGGTGTCAAGATTTGCTTCATCACAGCTGGAGGGTGGTTGGCGTCACTTTGTGTGGCGGGTTTTACAGCTATTGCTGTGAGAAAAATGGTGAAGACAG
AAATGACTGATGCTGAGCCTATGGCGAAACCCTCTCCTTTTTCTCCATTGGAAATATGGGCTTGGAGTGGGGTCTTCCTTGTATCATTTGTTGTCGCATT
ATTATATAGAACGGCATTAGGGACTGCAGCCAGAACATGCCTTCCTTTCCTACTAGCGTCCACCGTGCTAGGCTATATGGTTGGTTCTGGGTTACCATCT
GGTGTTAAGAAGGTTTTCCATCCCATTATTTGTTGTGCACTATCTGCAGATTTGGCAGCGTTGGCCTTTGGGTTCCTTTCCCAATCTGGACTCGATCCCG
TTCTAGGATATTACCTTACAAAAGTTTCATCTAATCCTGGAGCTGGTGATGTGTTAATGGGATTCTTGGGACCTGTCATTCTTTCTTTTGCCTTCTCAAT
GTTCAAGCAGCGAAAGCTTGTTAAGAGACATGCAGCTGAGATTTTCACGTCCGTCATTGTTGCAACACTATTTTCATTGTATTCAACGGCTCTCGTGGGA
CGTCTAGTTGGGTTAGAACCAACGTTGACTGTATCCATTATTCCCAGATGTATAACCGTGGCATTAGCCCTCAGCATTGTGTCATTCTTTGAAGGTGCCA
ATTCATCTCTCACAGCTGCTGTAGTTGTTGTAACTGGTCTCATTGGAGCAAATTTTGTACAAGCAGTGCTCGATAAATTAAATTTTCGTGATCCCATTGC
TCGAGGAATAGCAACTGCTTCCAGTGCTCATGGACTGGGAACTGCAGCATTGTCAGCCAAGGAACCTGAGGCACTTCCATTTTGTGCCATTGCTTATGCT
CTCACTGGTATATTTGGTTCATTGTTTTGTTCAGTTCCTGCAGTTAGGCAAAGCTTACTTGCAATAATTGGCTGA
AA sequence
>Potri.003G099600.1 pacid=42785768 polypeptide=Potri.003G099600.1.p locus=Potri.003G099600 ID=Potri.003G099600.1.v4.1 annot-version=v4.1
MATPLVAHSVQLCHHHSKQYSFKSQSRVNRDIGTKTLLGVYNGFHNVYNQSYFHKPWAPIRVLEPNSRFLQMGPQETCSSRGISKKSMSSEGSTSTSSSS
ISQQVIGILHLLVSLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFSVLVILDITIPAAATSLMNFFQPALLFIQRWLPLFYVPSLVVLPLSVKDIPAA
SGVKICFITAGGWLASLCVAGFTAIAVRKMVKTEMTDAEPMAKPSPFSPLEIWAWSGVFLVSFVVALLYRTALGTAARTCLPFLLASTVLGYMVGSGLPS
GVKKVFHPIICCALSADLAALAFGFLSQSGLDPVLGYYLTKVSSNPGAGDVLMGFLGPVILSFAFSMFKQRKLVKRHAAEIFTSVIVATLFSLYSTALVG
RLVGLEPTLTVSIIPRCITVALALSIVSFFEGANSSLTAAVVVVTGLIGANFVQAVLDKLNFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYA
LTGIFGSLFCSVPAVRQSLLAIIG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32080 AtLrgB membrane protein, putative (.1... Potri.003G099600
[exp]
0 1
AT2G21960 unknown protein Potri.005G084400
[exp]
2.23 0.9753
AT1G64150 Uncharacterized protein family... Potri.003G134300
[exp]
3.46 0.9737
AT3G46780 PTAC16 plastid transcriptionally acti... Potri.009G037000
[exp]
4.89 0.9694
AT1G32470 Single hybrid motif superfamil... Potri.003G089300
[exp]
5.09 0.9748 gdcH3,Pt-GDCH.3
AT3G04760 Pentatricopeptide repeat (PPR-... Potri.013G047000
[exp]
5.65 0.9716
AT1G13820 alpha/beta-Hydrolases superfam... Potri.010G158800
[exp]
6.70 0.9623
AT3G48200 unknown protein Potri.015G079000
[exp]
7.21 0.9488
AT1G56190 Phosphoglycerate kinase family... Potri.008G084500
[exp]
9.48 0.9703
Potri.012G012100
[exp]
9.79 0.9500
Potri.004G158800
[exp]
10.48 0.9350

Potri.003G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.