Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Ptr4CL13
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19010 634 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 433 / 1e-146 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 405 / 2e-135 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 385 / 7e-128 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 384 / 9e-128 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 363 / 5e-119 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 360 / 5e-118 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 320 / 1e-102 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 319 / 5e-102 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 312 / 3e-99 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012800 [exp] 437 / 2e-148 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 421 / 6e-142 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 405 / 1e-135 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 404 / 3e-135 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 388 / 5e-129 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 378 / 4e-125 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 376 / 2e-124 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 369 / 1e-121 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 355 / 3e-116 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016630 [exp] 525 / 0 AT4G19010 532 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 442 / 1e-149 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 433 / 1e-143 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 392 / 9e-131 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015999 [exp] 391 / 6e-130 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 382 / 1e-126 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 382 / 1e-126 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 380 / 4e-126 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 380 / 1e-125 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 363 / 8e-119 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G099700.2 pacid=42786516 polypeptide=Potri.003G099700.2.p locus=Potri.003G099700 ID=Potri.003G099700.2.v4.1 annot-version=v4.1 ATGGAGAAACTCACTGCCACCGCCTCAAAAACAACACTCCCAGAGTGGTACTCACCAGAAACAGGAATTTATAGCAGCAAACACCCTCCTATACCCTTAC CTGCAGACCCATTTCTTGATGTTGTTTCTTTCATTTTTTCACACCATAACCACAATGGCCTTACGGCTCTTATTGATTCCTCTTCTGGGTTTTCAATCTC TTACTCAAAGATTCTACCATTGGTGAAATCCGTTGCCTCTGGTCTTAGTAACATGGGCATTAAACAAGGTGATGTTGTTTTGCTTTTGTTGCCGAATTCC ATTCACTTTCCCATTGTTTTCCTCGGCGTGTTGTATCTTGGTGGCATTGTCAGTACCATGAATCCACTTAGTAGTGAACTAGAAGTCAAGCAGAGAATTG TTGATTGTAATGCATGTATTGCTTTTGTTGAACTAGAAAAAGTTTGTAAATTTCAGCCACTGGGGATTCCTGTGATTGGTGTACCAGAAAATGTAAATTT TGATGAGAAAAGTAATGACTTTGAAGCTTTCTATATGCTAGTTTATAGTAAGGGTGATGTGGGTGTAAAGCCAGTGATTAGGCAGCAAGATACAGCAGCA ATAATGTATTCTTCAGGTACTACTGCTGCTAGTAAAGGGGTTGTTCTAACACATAGGAATTTTATATCCATGGTTGAGCTTTTTGTTAAATTTGAGGCTT CACAGTACGAGTATTCGAGTACGGATAATGTGTATTTAGCTGTTTTGCCAATGTTTCATATATATGGGCTGTCGCTTTTTGTTGTGGGATTACTGTCACT GGGGTCTAGCATTGTTGTAATGAGGAAATTTGATGTCAGTGAGATGGTGAAGGTGATTGATAGGTATGGAGTAACTCATTTTCCAGTTGTTCCGCCAATA CTGACTGCGTTGACAAGGACTGCAAAAGGTGTTTGTGGAAATAGCTTGAAGTGTTTGAAGCTGGTTTCATGTGGAGCGGCTCCTTTGTTTGGCAAAACCA TACAGGATTTTGTGGAGGTTCTTCCGCATGTTGATTTCATTCAGGGATATGGCCTGACTGAGTCAACGGCTGTAGGAACCCGTGGCCTCAACACTGAAAA ATTCCAAAAATATTCTTCCATCGGACTTTTGGCTCCAAATATTGAAGCTAAAGTGGTGGATTGGATTACTGGAGCTTTATTGCCTCCTGGGGGAAGTGGT GAGCTTTGGATTCGGGGACCTGGAGTTATGAAAGAGTATTTAAACGGTGGAGAGGCAACTGCATTGACCATTGACAAAGATGGTTGGCTACATACCGGGG ATGTTGTTTATGCTGATCATGATGGGTACTTATATGTAGTTGACCGCTTGAAAGAGATTATCAAGTACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGA GGCTGTATTGATTTCCCATTGTGAGATACTTGATGCTGCTGTAATACCTGTCGTCGATAAAGAATGTGGAGAGATACCAGTAGCGTTTGTAGTCAAGAGG CAGGGAAGCATGCTAACACAGGAAGCTATTATCAACTATGTGGCCGAGCAGGTCGCACCTTATAAGAAGGTTAGGAAGGTGATCTTTACACAATCAATCC CAAAGTCTGCAGCTGGAAAGATACTCCGGAGGGAGCTCAAGTGCTCCCTGACTTCTAAACTGTAA
AA sequence Show only first row Show all	>Potri.003G099700.2 pacid=42786516 polypeptide=Potri.003G099700.2.p locus=Potri.003G099700 ID=Potri.003G099700.2.v4.1 annot-version=v4.1 MEKLTATASKTTLPEWYSPETGIYSSKHPPIPLPADPFLDVVSFIFSHHNHNGLTALIDSSSGFSISYSKILPLVKSVASGLSNMGIKQGDVVLLLLPNS IHFPIVFLGVLYLGGIVSTMNPLSSELEVKQRIVDCNACIAFVELEKVCKFQPLGIPVIGVPENVNFDEKSNDFEAFYMLVYSKGDVGVKPVIRQQDTAA IMYSSGTTAASKGVVLTHRNFISMVELFVKFEASQYEYSSTDNVYLAVLPMFHIYGLSLFVVGLLSLGSSIVVMRKFDVSEMVKVIDRYGVTHFPVVPPI LTALTRTAKGVCGNSLKCLKLVSCGAAPLFGKTIQDFVEVLPHVDFIQGYGLTESTAVGTRGLNTEKFQKYSSIGLLAPNIEAKVVDWITGALLPPGGSG ELWIRGPGVMKEYLNGGEATALTIDKDGWLHTGDVVYADHDGYLYVVDRLKEIIKYKGFQIAPADLEAVLISHCEILDAAVIPVVDKECGEIPVAFVVKR QGSMLTQEAIINYVAEQVAPYKKVRKVIFTQSIPKSAAGKILRRELKCSLTSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	0	1	Ptr4CL13
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	2.00	0.8411
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.010G208100 [exp]	4.89	0.7789
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	5.00	0.7690
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G125900 [exp]	8.48	0.7691
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120400 [exp]	16.94	0.7480
AT2G36710			Pectin lyase-like superfamily ...		Potri.006G120100 [exp]	27.71	0.7443
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	47.83	0.7236
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.016G074500 [exp]	53.72	0.7223
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.001G304000 [exp]	57.75	0.7231
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.008G113200 [exp]	60.92	0.6540

Compare expression of checked genes

Potri.003G099700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.