Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45590 134 / 2e-40 Ribosomal protein L35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133600 [exp] 215 / 1e-72 AT5G45590 105 / 3e-29 Ribosomal protein L35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010406 [exp] 136 / 4e-41 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1) Lus10010409 [exp] 136 / 4e-41 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1) Lus10012140 [exp] 118 / 6e-34 AT5G45590 148 / 7e-46 Ribosomal protein L35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01632 [poplar] [flax] Ribosomal_L35p Ribosomal protein L35
Representative CDS sequence Show only first row Show all	>Potri.003G099900.1 pacid=42784800 polypeptide=Potri.003G099900.1.p locus=Potri.003G099900 ID=Potri.003G099900.1.v4.1 annot-version=v4.1 ATGCAGAGATTATGCACCAAGCTCCGATCTTTAGCCTCTGTTTCCTCCTCACATCGCCTCCTCCACCCGCCTCCACAATCTTATCACCGACATCTCCATT TCGCCGCTGCTTCCCGTAAATGGAATCTTAATGGGTCCCTTTTGAACACATCTTCTTCTTTACCAATTCAGCTTCCTTCGGTGGCAGCTCTGTCCTCTTC GCGTCTGTCTCAACTCCCCCACTCGTTGGTGCAAGTGCGTCATGTTTCATCAAGGGAGCGGAAAAAGAGGAGGAAGCCAATGACTCCACGCACCTCCAAA GTAAAAAAGATTAAAATGAAGGCTTACTCGTCCTATAAGGAAAGATTCAGGACAATGAATGATGGGACTATTCGTCGCTGGAGGGAGGGCAAGAATCACA ATGCGCACTCGAAGTCAAAGAAATCAAAACGTCGACTGAGACAACCATCTACTGTACCTGCAGCCTATGCCAAAGTTATGAAGAAGCTTAATTTCTGTGG TTAA
AA sequence Show only first row Show all	>Potri.003G099900.1 pacid=42784800 polypeptide=Potri.003G099900.1.p locus=Potri.003G099900 ID=Potri.003G099900.1.v4.1 annot-version=v4.1 MQRLCTKLRSLASVSSSHRLLHPPPQSYHRHLHFAAASRKWNLNGSLLNTSSSLPIQLPSVAALSSSRLSQLPHSLVQVRHVSSRERKKRRKPMTPRTSK VKKIKMKAYSSYKERFRTMNDGTIRRWREGKNHNAHSKSKKSKRRLRQPSTVPAAYAKVMKKLNFCG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45590			Ribosomal protein L35 (.1)		Potri.003G099900 [exp]	0	1
AT3G58470			nucleic acid binding;methyltra...		Potri.016G063600 [exp]	1.00	0.9084
AT5G55140			ribosomal protein L30 family p...		Potri.002G225600 [exp]	2.00	0.8703
AT5G28060			Ribosomal protein S24e family ...		Potri.005G049400 [exp]	3.16	0.8551	Pt-RPS24.1
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.007G137600 [exp]	3.46	0.8601
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.003G182100 [exp]	3.74	0.8453
AT1G76860			Small nuclear ribonucleoprotei...		Potri.002G068800 [exp]	5.47	0.8464
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G023700 [exp]	6.24	0.8228
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.009G116100 [exp]	6.32	0.8098
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	9.79	0.8667
AT5G07900			Mitochondrial transcription te...		Potri.004G013100 [exp]	12.72	0.8125

Compare expression of checked genes

Potri.003G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.