Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19020 1019 / 0 CMT2 chromomethylase 2 (.1) AT1G69770 702 / 0 CMT3 chromomethylase 3 (.1) AT1G80740 667 / 0 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1) AT4G08990 211 / 4e-55 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G14140 208 / 3e-54 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT5G49160 205 / 3e-53 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G13610 199 / 2e-51 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT1G68580 44 / 0.0007 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009600 [exp] 783 / 0 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.018G138000 [exp] 223 / 1e-58 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.T046100 [exp] 222 / 1e-58 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 220 / 5e-58 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.003G215800 [exp] 181 / 3e-41 AT1G69770 221 / 7e-62 chromomethylase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010796 [exp] 941 / 0 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10017720 [exp] 738 / 0 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10014315 [exp] 705 / 0 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 702 / 0 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10004295 [exp] 214 / 3e-56 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10019220 [exp] 213 / 1e-55 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10016308 [exp] 65 / 6e-13 AT4G19020 58 / 1e-11 chromomethylase 2 (.1) Lus10033679 [exp] 67 / 3e-12 AT1G69770 89 / 2e-20 chromomethylase 3 (.1) Lus10037903 [exp] 45 / 0.0004 AT5G11470 183 / 1e-49 bromo-adjacent homology (BAH) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00145 [poplar] [flax] DNA_methylase C-5 cytosine-specific DNA methylase CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0049 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.003G100000.1 pacid=42787397 polypeptide=Potri.003G100000.1.p locus=Potri.003G100000 ID=Potri.003G100000.1.v4.1 annot-version=v4.1 ATGAAATCGTCATCATCACCAACGGATTCAAGACCAAAATTAACACCTTTGCAGGTGTACGAATCCACTTCTACCTCAAGAAGATCTCCAAGATTAGCTC CACCAAACAACAATGTACCTTCAAAAACCCCCAAATCTAACAAACCCAAAACAACTCACATTTCCCTCAGACGATCTCCGAGGCTTGAACCCACACCTGC TTCTCCCCAAAGCGTTTCGAGGAAAAAGCACAGCCGAAACGTTTCTAAAACGAAATGCTCTGCTCGAAACGTTTCTGTTGACCGCAAAATCCCGTCGAGG TCCTCAAGGGTGGGGAATTCGCGCATGCAAAATGTTGCCGCCAACAGAACAGTTTTGTTGGATTCTTCAGCTTTGAGGAGGTCGCCGAGGCTGTCAAGTG CGGACATGGAGATTGTTGTTAGTGAACGAAACGCTTCAGTTGTTGTGGCGGATACAGCGCGCTTGAGGAGGTCCCCGAGGCTGGCAAATGGGTACGCGGA GGTTGCGGTCAGTAAAGTGAGGACTTTCTTAAAGAGAAAGAGAGTGTCTGACGAGATGTCAAGGTCACCAAGAAATCAAAACGGCCGATTGGACGTACAG TTTGCCTTAGTTCAGAGTGAAAAATGCTCGCGCTTCATAGTAAACGAAGAGAATGAAAGAAATTGTTTGAAAGTAGAATGCTCGAGTAAGGACTTATCAA AGGGGTCACCTGTAGCATGCAGTTCAGCAAATGCTAAACTGGGATGCTGTGAAAAGCGTGGTTGTCAGTCTGTTTTGTTGACAATTTCTGACTCTGAAGT AGGGGATTCGGGAGAGTTTGAAGCCAAACCGCTATTGCTTCCATGGCATGGAGATAATGAGAGTCAAACTGGGATGGTAAAATGTGATGATGGCTCAAGT GTGTTTGAGGAGGAGCCGTTGAGGATGTCTCCAAGTTTTGATTTTGCAAATGAAAATGCTGTTATCAACGAGTCTCCCATAAAATCTTGTAAATGGTCCT CGGCATTGGATGGGGATGGGAATTTTGAAGTGATATCTTGTTCCAGTGGGATTTTTGATTCGAACGATGCATGCCCTTCTAAGAGGGTTAAAATTTGTGA AGAAAATTCTGTTTCAGGAATGTCAGATGAGAAGCTCTTGAGACGGTCTCCCAGGACAAACTCAATTGTTGTGACTGAAAATGGGGAAAACAAGTCAGGT AAGAAGCAATCTCCAAAGACGAATTCTGGTAAAGAACTGTCTTTGGAGAAGGCTTCTTCAGGGAAGAAGCAGAAGGAACACAGAGGTAATTGTTCCCTGA TTGGAGATCCTGTCGCCCATGATGAAGCTCAAGAAAGGTGGCATTGGCGATATGAAATGAAGAGTAAGAGAACCAAGCATCCAAGACTCGCTTTAGATGA TGATGATGAAGATAAGGTTGTTTGGAATGTTGAATGCCATTACACTCAGGCTAATATTGAAGGTCGCATCATTAATCTTGGAGATTGTGTCTATGTAAAG GGTGAAGGAGCAAAAAATCATATTGGTAGTATCTTAGAGTTTTTCAAGACAACAGACAGGGAAGATTATTTTAGGGTCCAATGGTTTTACAGAGCTGAGG ATACGGTGATGAAAGAAGCAGCTGATTTTCATGACAATAAGCGGTTATTTTATTCCACAGTGATGAATGATAATCCAATAGATTGCATTATTTCTAAAGT CACTGTTGTACAGATATCACCTAGGGTACATTTAAAATTTCATTCAACACCAGCGTCTGACTTCTACTTTGACATGGAATACTGTGTGGATTATTCAACA TTTCGAACTTTGCTGACTGATTGTTCATTAAGGGGACATGAGTTATCACCACTGCCTTTCTGTGATTCTCGATCTGCAACTCCCAGTGATATTTCAATGG AAAACATGTCCACTTGTGGAAGTTACAAAGCAAAGTTGACACTACTAGATCTTTTCTCTGGCTGTGGTGGAATGTCAACTGGATTATGCCTGGGTGCCAA AGTTTCTTGTGTCGATCTTGTGACGAGATGGGCGCTAGACAGTGATGAGTCTGCATGTCAAAGCTTGAAGTTAAATCATCCGGAGACACATGTTAGGAAT GAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGCAAAAGCTATGCAAACGTTATGCGGTCAATGATGTAGGAAGGACACATAAGTCACGGTCAA TGGCATCAAGTATGTCAAAACAAAATAAAAATTCTTCAAATGATGATGATATTGCTTCTGGTGAATATGAAGTCGCTAGGCTTGTTGACATTTGTTATGG GAAGACCGATAAGAGAGGAAAGCGTGGGCTGAAATTTAAGGTGCACTGGAAGGGTTATAGTACCAGTGAAGATTCATGGGAGCCAATTGAAGGCTTAAGT AACTGTGAACATTCTATACGGGATTTTGTAAGAGAGGGGTTCAAATCCAAGATCTTGCCACTTCCTGGTGATGCTGATGTGATTTGTGGAGGTCCTCCAT GCCAAGGGATTAGTGGCTATAATCGCTATAGAAATGTTGATTCTCCACTTGCTGATGAAAGAAATATTCAGATTGTAGTCTTCATGGACATAGTGCAGTT CTTAAAACCTAAATATGTGCTGATGGAAAATGTAGTTGACATCCTTAGATTTGACAAGGCTTCGTTTGCTAGATATGCTTTAAGCCGATTGGTGCATATG AAATACCAAGCAAGGCTTGGCACTGTTGCAGCTGGTTGTTATGGTCTTCCACAATTTCGGCTGCGTGTTTTCTTGTGGGGAGCTCATCCCAAGGAGAAAC TGCCTCAATTTCCACTTCCTTCTCATGATGTTATTGTCAGATATTGGCCTCCACCTGAGTTTGAGCGGAACACTGTTGCCTATGATGAAGATCAACCTCG TGATGATCTAGAAAAAGCCACAGTTCTTCGTGATGCCATTTCAGATCTTCCAGATGTCACAAGCCATGAAACCCGTGAGGAAATGGCATACGACAAGCCT CCAGAAACTGACTTTCAACAATTCATAAGGTCAACAAGAAACGAGATGACTGGTTCTGAGCTCAGTGGAACAAGAATGATCAATTTGCTATATGACCATC GTCCTTATTCATTAACTGAAGAAGATTTTGCTCGAGTTTGCCAAATTCCTAAAAAAAAGGGAGCAAATTTCAGGGACCTACCTGGTGTGGTTGTAGGAGC TGACAATGTTGCCCGGCGGGATCCAACGGAAGAGCAAATGTTGTTGCCATCTGGAAAGCCCCTGGTACCTGATTTTGCCTTAAATTTCGAAGGAGGAAAG TCTAGAAGGCCATATGCGAGATTATGGTGGGATGAAACAGTGTCGACTGTTGTTACTTTTCCGGATCTTCACAGCCAGGCGGTGATGCATCCAGAGCAAG ATCGAGTTCTCACCATACGAGAATGTGCTAGGCTGCAAGGTTTTCCTGATTATTATAGATTCTGCGGGACAGTTAAACAAAGGTATCGTCAAATTGGAAA TGCAGTTGCAGTTCCTGTAGGTCGTGCCTTGGGATTCACGTTGGGGATGGCATTTCAAAAACTAAGTGGGGATGATCCGCTAATGACATTACCTCCCAAG TTCTCTCACTCAACTAACCTTCAATTAGCTAAATCACTGTTTCAGAAGGCTGAATAA
AA sequence Show only first row Show all	>Potri.003G100000.1 pacid=42787397 polypeptide=Potri.003G100000.1.p locus=Potri.003G100000 ID=Potri.003G100000.1.v4.1 annot-version=v4.1 MKSSSSPTDSRPKLTPLQVYESTSTSRRSPRLAPPNNNVPSKTPKSNKPKTTHISLRRSPRLEPTPASPQSVSRKKHSRNVSKTKCSARNVSVDRKIPSR SSRVGNSRMQNVAANRTVLLDSSALRRSPRLSSADMEIVVSERNASVVVADTARLRRSPRLANGYAEVAVSKVRTFLKRKRVSDEMSRSPRNQNGRLDVQ FALVQSEKCSRFIVNEENERNCLKVECSSKDLSKGSPVACSSANAKLGCCEKRGCQSVLLTISDSEVGDSGEFEAKPLLLPWHGDNESQTGMVKCDDGSS VFEEEPLRMSPSFDFANENAVINESPIKSCKWSSALDGDGNFEVISCSSGIFDSNDACPSKRVKICEENSVSGMSDEKLLRRSPRTNSIVVTENGENKSG KKQSPKTNSGKELSLEKASSGKKQKEHRGNCSLIGDPVAHDEAQERWHWRYEMKSKRTKHPRLALDDDDEDKVVWNVECHYTQANIEGRIINLGDCVYVK GEGAKNHIGSILEFFKTTDREDYFRVQWFYRAEDTVMKEAADFHDNKRLFYSTVMNDNPIDCIISKVTVVQISPRVHLKFHSTPASDFYFDMEYCVDYST FRTLLTDCSLRGHELSPLPFCDSRSATPSDISMENMSTCGSYKAKLTLLDLFSGCGGMSTGLCLGAKVSCVDLVTRWALDSDESACQSLKLNHPETHVRN EAAEDFLELLKEWQKLCKRYAVNDVGRTHKSRSMASSMSKQNKNSSNDDDIASGEYEVARLVDICYGKTDKRGKRGLKFKVHWKGYSTSEDSWEPIEGLS NCEHSIRDFVREGFKSKILPLPGDADVICGGPPCQGISGYNRYRNVDSPLADERNIQIVVFMDIVQFLKPKYVLMENVVDILRFDKASFARYALSRLVHM KYQARLGTVAAGCYGLPQFRLRVFLWGAHPKEKLPQFPLPSHDVIVRYWPPPEFERNTVAYDEDQPRDDLEKATVLRDAISDLPDVTSHETREEMAYDKP PETDFQQFIRSTRNEMTGSELSGTRMINLLYDHRPYSLTEEDFARVCQIPKKKGANFRDLPGVVVGADNVARRDPTEEQMLLPSGKPLVPDFALNFEGGK SRRPYARLWWDETVSTVVTFPDLHSQAVMHPEQDRVLTIRECARLQGFPDYYRFCGTVKQRYRQIGNAVAVPVGRALGFTLGMAFQKLSGDDPLMTLPPK FSHSTNLQLAKSLFQKAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	0	1
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	1.41	0.8900
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	1.41	0.9054	Pt-SPIKE1.3
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	2.44	0.8895
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	3.46	0.8876	XIB.1
AT4G11450			Protein of unknown function (D...		Potri.001G104200 [exp]	4.47	0.8664
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089600 [exp]	5.00	0.8500
AT1G77620			P-loop containing nucleoside t...		Potri.005G177000 [exp]	5.09	0.8498
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	5.74	0.8629
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	6.32	0.8758
AT2G35035		URED	urease accessory protein D (.1...		Potri.001G159600 [exp]	9.27	0.8362

Compare expression of checked genes

Potri.003G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.