Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBERp8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32100 462 / 2e-165 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 442 / 2e-157 ATPRR2 pinoresinol reductase 2 (.1) AT1G75290 278 / 1e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 270 / 1e-89 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 258 / 9e-85 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 255 / 7e-84 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 252 / 8e-83 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 220 / 3e-70 NmrA-like negative transcriptional regulator family protein (.1) AT1G68540 51 / 3e-07 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G35250 47 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133300 [exp] 566 / 0 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 462 / 2e-165 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.009G118100 [exp] 278 / 6e-93 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 270 / 1e-89 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 268 / 3e-89 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 268 / 4e-89 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 258 / 8e-85 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 256 / 3e-84 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 231 / 2e-74 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012143 [exp] 495 / 3e-178 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10010403 [exp] 494 / 4e-178 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012145 [exp] 461 / 7e-165 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10007599 [exp] 436 / 1e-150 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10012147 [exp] 414 / 4e-146 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10040442 [exp] 286 / 5e-96 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 279 / 3e-93 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 281 / 6e-92 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 271 / 3e-90 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 267 / 1e-88 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.003G100200.1 pacid=42784555 polypeptide=Potri.003G100200.1.p locus=Potri.003G100200 ID=Potri.003G100200.1.v4.1 annot-version=v4.1 ATGGCAAAGAGCAAGGTTCTCGTTGTTGGGGGTACTGGGTATATTGGTAGGAGAATAGTGAAGGCAAGCTTAGACCAAGGCCATACAACTTATGTCCTTC AACGCTCTGAGATAGGCCTTGACATCGAGAAGCTGCATCTACTATTGTCATTTAAAAAGCAAGGAGCTCACCTGGTTCAGGGTTCATTCTCCGATCAGCA GAGCCTTGTGGAAGCCGTGAAGAAAGTTGATGTTGTCATTTGCACCATGTCCGGGGTGCATTTTAAGAGCCACAACATTTTGATGCAGCTCAAGCTTGTG GATGCCATCAAAGAAGCAGGAAACGTGAAGCGTTTCTTGCCTTCAGAATTCGGTATGGACCCAGCAACAATGGAGCATGCACTGGCACCAGGAAGAGAAA CATTTGATCAGAAAATGATTGTGAGAAAGGCAATTGAGGATGCTAAGATCCCCTTCACGTATGTATCCGCTAACTGCTTTGCGGGTTATTTTGTTGGTAG CCTCTGTCAGCTTGAGACCCTGACCCCTCCAAAAGACAAAGTCCGGCTTTATGGAGATGGCAACGTTAAGGTTGTTTTTATGGATGAAGATGACGTTGCA ACATACGCAATTAAAACAATCGATGATCCTCGGACTTTGAACAAAACTTTGTACCTAAGGCCACCAGAAAACATTCTCACACAAAGACAGTTAGTTGAGA TCTGGGAGAAACTCAGTGGAAAGAAACTAGAAAAGATCAGCATTCCCGGAGAAGACTTCCTAGCTTCCATGAAAGGCATGGATTATGTAGCCCAGGCAGG AATGGGGCATTTCTATCATATTTTCTATGAAGGCTGTTTGACAAACTTCGAAATAGGAGAAGAAGCTTCGGACCTTTATCCAGAAGTGAAATACACTCGC ATGGATGAATATCTGAAAATCTTCCTTTGA
AA sequence Show only first row Show all	>Potri.003G100200.1 pacid=42784555 polypeptide=Potri.003G100200.1.p locus=Potri.003G100200 ID=Potri.003G100200.1.v4.1 annot-version=v4.1 MAKSKVLVVGGTGYIGRRIVKASLDQGHTTYVLQRSEIGLDIEKLHLLLSFKKQGAHLVQGSFSDQQSLVEAVKKVDVVICTMSGVHFKSHNILMQLKLV DAIKEAGNVKRFLPSEFGMDPATMEHALAPGRETFDQKMIVRKAIEDAKIPFTYVSANCFAGYFVGSLCQLETLTPPKDKVRLYGDGNVKVVFMDEDDVA TYAIKTIDDPRTLNKTLYLRPPENILTQRQLVEIWEKLSGKKLEKISIPGEDFLASMKGMDYVAQAGMGHFYHIFYEGCLTNFEIGEEASDLYPEVKYTR MDEYLKIFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	0	1	PCBERp8
AT1G04650			unknown protein		Potri.001G053000 [exp]	1.41	0.8675
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Potri.002G109300 [exp]	2.44	0.8625	OPT2.1
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.015G129100 [exp]	3.87	0.8458
AT2G47360			unknown protein		Potri.002G195400 [exp]	4.89	0.8534
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	6.32	0.8392
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	8.83	0.8456
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	13.49	0.8444	MYB.38,MYB090
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	14.89	0.8001
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.014G092300 [exp]	15.55	0.8328
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	15.62	0.8637	SHMT3

Compare expression of checked genes

Potri.003G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.