Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48790 431 / 4e-153 Domain of unknown function (DUF1995) (.1) AT1G73060 52 / 1e-07 LPA3 Low PSII Accumulation 3 (.1) AT5G27560 42 / 0.0004 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044000 [exp] 53 / 9e-08 AT1G73060 529 / 0.0 Low PSII Accumulation 3 (.1) Potri.013G020800 [exp] 45 / 5e-05 AT5G27560 436 / 4e-154 Domain of unknown function (DUF1995) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007599 [exp] 449 / 1e-155 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10026089 [exp] 51 / 6e-07 AT1G73060 472 / 1e-167 Low PSII Accumulation 3 (.1) Lus10002315 [exp] 42 / 0.0005 AT1G73060 499 / 4e-177 Low PSII Accumulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [poplar] [flax] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Potri.003G100300.15 pacid=42787236 polypeptide=Potri.003G100300.15.p locus=Potri.003G100300 ID=Potri.003G100300.15.v4.1 annot-version=v4.1 ATGGCGTTATCCTACACCACAACAATTGCCTCTTCACTACTTCACGCAGCAACTCCTTCACTTCCAAATAAAAAAAGTTTTTGGATAGAGAAGGAAGCCC TTTTCAGAATTGCAAGTAAATTAACAGTACCCAGGAATGGAAGAAGTTCTTCTGTTGAATTTGATGTGCCATTTCCTCGTGATTATGAGGAGCTTCTTGA TCAAGCCAAAAAAGCAACTGAATTGGCTTGGGAAGATAACAAACAGCTGATGGAGATTGAATTCCCAACGGCCGGACTCGAATCTGTACCGGGTGACGGT GAAGGAGGAATAGAGATGACTGGAAGCATGCAGTTAATTCGTGAATTCTGTGATCGTTTTGTAAGTCCAGAAAAGACTACAAGGACCAGAATTTTCTTTC CAGAGGCTAATGAAGTTAAATTTGCAAGACAATCAGCATTTGAAGGATCTTCGCTTAAGTTGGACTATTTGACAAAGCCATCATTTTTCGAGGATTTTGG TTTTGTTGAAAAAGTCAAAATGACAGACCGTGTGAAGCCAGAGGATGAACTGTTCCTAGTTGCCTATCCATATTTCAATGTTAATGAAATGCTTGTGGTG GAAGAGCTTTACAAAGAAGCTGTTGTGGAAACAGCCCGAAAACTGATTATATTCAATGGAGAACTTGACCGCATAAGATCTGGTTATTATCCATCCTTTT TCTATCCTAAGCTTGCCTCTCTTTTGAAGACACTCTTCCCATTGATGGAGACTGTATATTACATTCACAATTTTAAAGGGCGCAATGGAGGAACCCTTTT CAGGTGCTACCCAGGTCCCTGGCAAGTCCTACGAAAAGTTAGGAATGCCTATATATGTTTGCATCAACAGGAAGCTATGCCCTCCCTTAAAGAAGTTGCC CTGGATATTCTGCCGTCAGTTTGA
AA sequence Show only first row Show all	>Potri.003G100300.15 pacid=42787236 polypeptide=Potri.003G100300.15.p locus=Potri.003G100300 ID=Potri.003G100300.15.v4.1 annot-version=v4.1 MALSYTTTIASSLLHAATPSLPNKKSFWIEKEALFRIASKLTVPRNGRSSSVEFDVPFPRDYEELLDQAKKATELAWEDNKQLMEIEFPTAGLESVPGDG EGGIEMTGSMQLIREFCDRFVSPEKTTRTRIFFPEANEVKFARQSAFEGSSLKLDYLTKPSFFEDFGFVEKVKMTDRVKPEDELFLVAYPYFNVNEMLVV EELYKEAVVETARKLIIFNGELDRIRSGYYPSFFYPKLASLLKTLFPLMETVYYIHNFKGRNGGTLFRCYPGPWQVLRKVRNAYICLHQQEAMPSLKEVA LDILPSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48790			Domain of unknown function (DU...		Potri.003G100300 [exp]	0	1
AT5G57040			Lactoylglutathione lyase / gly...		Potri.018G056200 [exp]	14.35	0.9320
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.009G081600 [exp]	22.13	0.9260	MDHG.1
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.002G073000 [exp]	28.54	0.9228
AT3G14420			Aldolase-type TIM barrel famil...		Potri.001G394400 [exp]	30.52	0.9229
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.010G180400 [exp]	38.02	0.9226
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G100400 [exp]	64.74	0.9120	CAT2
AT2G36895			unknown protein		Potri.016G099300 [exp]	64.87	0.8898
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.001G134000 [exp]	71.05	0.9118
AT5G47435			formyltetrahydrofolate deformy...		Potri.001G156600 [exp]	73.46	0.9077
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.005G254100 [exp]	84.29	0.8995	Pt-GAPB.2

Compare expression of checked genes

Potri.003G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.