Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32120 363 / 2e-117 unknown protein AT1G55240 128 / 4e-35 Family of unknown function (DUF716) (.1) AT1G55230 120 / 4e-32 Family of unknown function (DUF716) (.1) AT1G49470 107 / 2e-27 Family of unknown function (DUF716) (.1) AT5G19870 100 / 4e-25 Family of unknown function (DUF716) (.1) AT5G13890 50 / 5e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G132800 [exp] 432 / 2e-154 AT1G32120 377 / 2e-122 unknown protein Potri.003G216500 [exp] 134 / 2e-37 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 129 / 2e-35 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 125 / 4e-34 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 106 / 6e-27 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 102 / 3e-25 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.005G122800 [exp] 44 / 6e-05 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.002G237200 [exp] 41 / 0.0006 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038547 [exp] 382 / 8e-135 AT1G32120 429 / 3e-142 unknown protein Lus10014806 [exp] 374 / 1e-131 AT1G32120 424 / 1e-140 unknown protein Lus10039191 [exp] 108 / 8e-28 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 105 / 3e-26 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 99 / 6e-24 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 91 / 4e-21 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10012588 [exp] 45 / 4e-05 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10041505 [exp] 44 / 7e-05 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G100700.1 pacid=42784810 polypeptide=Potri.003G100700.1.p locus=Potri.003G100700 ID=Potri.003G100700.1.v4.1 annot-version=v4.1 ATGGGTTCTTTCATCGGGCATGCTTTACCAGGAACATTGTTTCTATTGGTTGGTGTATGGCATATATGGAGCTCTTTGGTTAGATATGTATCGAATCCAA AGTCATTTCGCGTCCGGGTTTGGAACCCTGTGCCTGGTTTTGATGGGAAGCTTGAGTACTTGGAGCTTTATCTTGTAGCGGGTGGTGCCTTTATTGACAT GTGTATTGAGGTTTTGTACTCTACGCACCTAAAATTCTTTATCAACGGAGTCTTGAATCCTCATCATATGAATGATTTTGAGCACGGTGGAATGCTTCTC ATGTTCTTTATCTTCGGGGTTGTCAGTTTGCTATCAGAGAAAACAAGATTTCTACCCTTGCCAGAAGGAGCCCTCTGCTTGGTTGCTGCAGCGGCATTTT CTGCAGAGTATCTCCTGTTTTACTTTCACTCAACAACCCATAAAGGGCTTGAAGGGCACTACCATCTCCTCCTTGTCCTTCTGATAGGCCTCTGTGTTTT ATCCGTTGCGGCGGGGGCACTTCTCCGAACCAGCTTTCCTGTTGATTTATCCAGTGGCATTGCTATAACTCTCCAAGGCCTCTGGTTTTATCAGACTGCC TTCACTCTCTACGGTCCCATGATGCCCAACGGATGTCAGCTTAAGGGCGATCAGATTGTGTGTCGATCATCAGACAGTCTGGTTCGAGGCGAGCTGCTTG CAAACTTTCAGCTCTTCTCCTTGGTCTTTGGTGTCCTAGTCACTGTTGCGGCCTCATATGGTTTTGCAGCTTCAAGATATGGGCATTCTGATCTTAAGAG CTTGCATGTTCTTCCCGATGGATTAGAATGA
AA sequence Show only first row Show all	>Potri.003G100700.1 pacid=42784810 polypeptide=Potri.003G100700.1.p locus=Potri.003G100700 ID=Potri.003G100700.1.v4.1 annot-version=v4.1 MGSFIGHALPGTLFLLVGVWHIWSSLVRYVSNPKSFRVRVWNPVPGFDGKLEYLELYLVAGGAFIDMCIEVLYSTHLKFFINGVLNPHHMNDFEHGGMLL MFFIFGVVSLLSEKTRFLPLPEGALCLVAAAAFSAEYLLFYFHSTTHKGLEGHYHLLLVLLIGLCVLSVAAGALLRTSFPVDLSSGIAITLQGLWFYQTA FTLYGPMMPNGCQLKGDQIVCRSSDSLVRGELLANFQLFSLVFGVLVTVAASYGFAASRYGHSDLKSLHVLPDGLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32120			unknown protein		Potri.003G100700 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116210 [exp]	11.66	0.8109
AT1G10380			Putative membrane lipoprotein ...		Potri.007G094800 [exp]	11.91	0.8243
					Potri.015G025700 [exp]	18.16	0.7826
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.011G032100 [exp]	22.36	0.7860
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	24.43	0.8137
					Potri.008G020500 [exp]	27.71	0.7910
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	30.19	0.7677	ATTDX.2
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G146700 [exp]	31.62	0.7118
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.006G084200 [exp]	32.24	0.8103	Pt-DOF2.3
AT1G02180			ferredoxin-related (.1)		Potri.002G136000 [exp]	33.91	0.7713

Compare expression of checked genes

Potri.003G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.