Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37740 140 / 2e-37 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 132 / 5e-35 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 123 / 4e-33 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G36400 126 / 5e-33 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G22840 122 / 8e-31 GRF ATGRF1 growth-regulating factor 1 (.1) AT3G52910 115 / 6e-29 GRF ATGRF4 growth-regulating factor 4 (.1) AT5G53660 95 / 1e-21 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 94 / 4e-21 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 79 / 3e-16 GRF ATGRF9 growth-regulating factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G132600 [exp] 604 / 0 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.013G077500 [exp] 295 / 1e-98 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 272 / 8e-90 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 172 / 2e-50 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 171 / 7e-50 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.014G012800 [exp] 160 / 2e-44 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 152 / 3e-41 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.007G007100 [exp] 144 / 3e-38 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.003G065000 [exp] 138 / 5e-38 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020352 [exp] 214 / 5e-67 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 213 / 5e-65 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10033441 [exp] 133 / 3e-35 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 132 / 4e-35 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10037668 [exp] 125 / 6e-34 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 125 / 6e-34 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10015651 [exp] 124 / 1e-33 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10011559 [exp] 129 / 3e-33 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 128 / 3e-33 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10004455 [exp] 124 / 3e-32 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.003G100800.2 pacid=42785167 polypeptide=Potri.003G100800.2.p locus=Potri.003G100800 ID=Potri.003G100800.2.v4.1 annot-version=v4.1 ATGAGCAACTCATCAGTCACAGTGGCGGGGGTGGGATCAAGATCACCACCAGGTTTCACGATGTCTCAGTGGCATGAGCTGGAGCATCAAGTTCTTATCT TTAAGTGTTTAAATGCAGGGTTACCTGTCCCTCCTTCCCTTCTCCTTCCTATTCGTAAGAGTTTTCAGCTTCTTTCCCCTGGTTTCTTGCACCCATCAAA TTTGAGCTACTGTTCCTATTTTGGGAAGAAGATTGACTCAGAGCCAGGGAGGTGTCGGAGGACAGATGGCAAGAAATGGAGGTGCTCCAAAGATGCTCAC CCAGACTCCAAGTACTGTGAGCGGCATATGAATAGAAGCCGTAACCGTTCAAGAAAGCCTGTGGAATCACAAACTACCTCTCAGTCCTTGTCAACTGTGG CATCAGAAATTGCAACTGGGAGCAGCAGCATTGGGAGCAGAGGGTATCCAACTAATCCTGGGACCTTAGGTTTGGGAAGTAATATGTCACGTTGGCAGAT GGAGTCTATGCCTTATGGTGTTAATAGTAAAGACTACAGGTCTCTCCATGGACCGAAGCCTGAAGCAGATGAGAAAACTTTCCTACCAGAAGCTTTGGGA AATACAAGAAGCTTTGGAATGAACTCTACTGTGGACAGCACTTGGCATCTCACATCCCAAGTCCCTGCAAACCCTGTGCCAGAATCAAGAAATGGTTCTC TTTTGCAAAACTACCCACAAGTACAGACACTGCAGGATTTTGAGCCCCTAACTGTTGATGCTGCATCGTCAAAACAACAGCAGCAGCAGCATTATTTATT TGGAAGGGAGTTCAGTTCATCAGGATCTATGAGGCGGGAAAATCAGTCTCTTCAGCCTCTCTTTGACGAGTGGCCAAAATGCAGGGATATGGATTCCCAT CTCACTGATCAAAGATCTAACAATAACTCGTCTGCTGTTCAGCTATCAATGGCCATTCCAATGGCTCCTAACCCTGCTGCGAGGAGTTATCATTCCCCAA ATGATGCTTGA
AA sequence Show only first row Show all	>Potri.003G100800.2 pacid=42785167 polypeptide=Potri.003G100800.2.p locus=Potri.003G100800 ID=Potri.003G100800.2.v4.1 annot-version=v4.1 MSNSSVTVAGVGSRSPPGFTMSQWHELEHQVLIFKCLNAGLPVPPSLLLPIRKSFQLLSPGFLHPSNLSYCSYFGKKIDSEPGRCRRTDGKKWRCSKDAH PDSKYCERHMNRSRNRSRKPVESQTTSQSLSTVASEIATGSSSIGSRGYPTNPGTLGLGSNMSRWQMESMPYGVNSKDYRSLHGPKPEADEKTFLPEALG NTRSFGMNSTVDSTWHLTSQVPANPVPESRNGSLLQNYPQVQTLQDFEPLTVDAASSKQQQQQHYLFGREFSSSGSMRRENQSLQPLFDEWPKCRDMDSH LTDQRSNNNSSAVQLSMAIPMAPNPAARSYHSPNDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	0	1
AT2G18410			unknown protein		Potri.017G115566 [exp]	4.00	0.7973
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	4.00	0.7597	ARL1.3
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.008G142301 [exp]	5.00	0.7583
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	7.34	0.7279
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.002G181700 [exp]	7.74	0.7465
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	8.83	0.7246
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	11.83	0.7426
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	18.76	0.6879
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	19.33	0.6726
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	21.07	0.7258

Compare expression of checked genes

Potri.003G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.