Plant FIBer expression Database

Potri.003G100900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53400 231 / 2e-75 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1)
AT4G27890 229 / 1e-74 HSP20-like chaperones superfamily protein (.1)
AT5G58740 64 / 1e-12 HSP20-like chaperones superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G132500
[exp]
289 / 3e-99 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Potri.012G014100
[exp]
233 / 7e-76 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Potri.015G013900
[exp]
224 / 1e-72 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Potri.001G251204
[exp]
72 / 2e-15 AT5G58740 298 / 1e-105 HSP20-like chaperones superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019028
[exp]
248 / 1e-81 AT5G53400 324 / 3e-111 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Lus10005009
[exp]
234 / 1e-75 AT5G53400 306 / 2e-103 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Lus10040656
[exp]
219 / 7e-72 AT5G53400 216 / 3e-70 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Lus10018250
[exp]
214 / 1e-69 AT5G53400 213 / 4e-69 BOBBER1, HSP20-like chaperones superfamily protein (.1)
Lus10027048
[exp]
74 / 4e-17 AT4G27890 68 / 3e-15 HSP20-like chaperones superfamily protein (.1)
Lus10018234
[exp]
64 / 3e-12 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1)
Lus10040670
[exp]
63 / 3e-12 AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0190 HSP20 PF04969 CS CS domain
Representative CDS sequence
>Potri.003G100900.1 pacid=42785767 polypeptide=Potri.003G100900.1.p locus=Potri.003G100900 ID=Potri.003G100900.1.v4.1 annot-version=v4.1
ATGGCTATTCTCTCCGATCACGAAGAGCCTCAACAAAAACAGCAAACCCCAACATCTCCTTCCTCATTCTCCTTCAACACGGTTCTTGATCCCTCAAACC
CTCTAGGGTTTTTGGACTCTGCCCTAAACTTTTTGTCTCAAAAGTCTAATGTCCTAAAGAACGATGTCTCTCCCCTAGTTAAGGAGTTCAAGAAAAGGAT
CAGGGCTGAAGAGGATTCAAAGAAAGCGGAAGAAAAAATACGTGCCGAGAAAAAGAAGAGAGAAGAGGAGAAGAAAAGGATGCGGGTTCCGAACAAAGGC
AATGGTCTTGACATGGAAAGCCATTCATGGGCACAGACCCTGCAAGAAGTAACTATCACTGTTCATGTCCCTCCTGGAACGAAGTCTAAGGATGTTGTGT
GCGAGATAAAGAGAAAATCTGTGAAAGTTGGACTTAGAGGCCATTCTCCAATTCTTGATGGTGAACTATTTGAGACAATCAAGATTGACGATTGTATCTG
GAATCTGGAGGACCAAAAGACTGTTTCTGTTCTTTTGACAAAGTGTGACAGGATGAATTGGTGGAAGTCCTTGCTGAAGGGTGGTCCTGAGATTGATATT
CAAAAAGCTGAACCAGAGCCTAGCAGGCTGTCTGATTTGGATCCAGAAATAAGGTCCACCGTGGAAAAGATGATGTTTGATCAACAACAGGAACAGTTAG
GTCTCCCTACCAGCAAAGAGATCGAGAATGAAAGCCTCTTGAAGCTATTCATGGCTCAGAATCCAAACTTCTCCAACAAGAATCCAAACATTGACTTTTC
CAACATGAACATGAAGTAG
AA sequence
>Potri.003G100900.1 pacid=42785767 polypeptide=Potri.003G100900.1.p locus=Potri.003G100900 ID=Potri.003G100900.1.v4.1 annot-version=v4.1
MAILSDHEEPQQKQQTPTSPSSFSFNTVLDPSNPLGFLDSALNFLSQKSNVLKNDVSPLVKEFKKRIRAEEDSKKAEEKIRAEKKKREEEKKRMRVPNKG
NGLDMESHSWAQTLQEVTITVHVPPGTKSKDVVCEIKRKSVKVGLRGHSPILDGELFETIKIDDCIWNLEDQKTVSVLLTKCDRMNWWKSLLKGGPEIDI
QKAEPEPSRLSDLDPEIRSTVEKMMFDQQQEQLGLPTSKEIENESLLKLFMAQNPNFSNKNPNIDFSNMNMK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53400 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones... Potri.003G100900
[exp]
0 1
Potri.001G360550
[exp]
16.58 0.7978
AT2G34970 Trimeric LpxA-like enzyme (.1) Potri.005G045200
[exp]
22.44 0.8120
AT1G02550 Plant invertase/pectin methyle... Potri.002G194800
[exp]
33.04 0.7374
AT2G38152 alpha 1,4-glycosyltransferase ... Potri.006G098900
[exp]
41.36 0.7915
AT2G38710 AMMECR1 family (.1.2) Potri.008G019325
[exp]
41.64 0.8229
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.010G052150
[exp]
76.89 0.7951
AT5G18820 Cpn60alpha2, EM... embryo defective 3007, chapero... Potri.015G123600
[exp]
119.41 0.7832
AT1G20140 ASK4 SKP1-like 4 (.1) Potri.009G135800
[exp]
122.41 0.7731 SKP1.4
AT2G16920 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.013G108500
[exp]
139.78 0.7549
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motif... Potri.006G048300
[exp]
142.71 0.7462

Potri.003G100900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.