Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 277 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT1G55800 179 / 8e-53 Domain of unknown function (DUF2431) (.1) AT4G26485 158 / 8e-47 Domain of unknown function (DUF2431) (.1) AT5G56060 152 / 1e-43 Domain of unknown function (DUF2431) (.1) AT5G56075 136 / 3e-37 Domain of unknown function (DUF2431) (.1) AT5G25030 117 / 7e-31 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165600 [exp] 305 / 4e-101 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 195 / 2e-60 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 192 / 5e-59 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 189 / 3e-58 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 163 / 1e-47 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 150 / 3e-42 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 103 / 9e-27 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003066 [exp] 52 / 2e-08 AT1G55800 48 / 1e-07 Domain of unknown function (DUF2431) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032898 [exp] 244 / 3e-78 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032900 [exp] 238 / 1e-75 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032901 [exp] 206 / 1e-63 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 164 / 6e-47 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 153 / 1e-42 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 153 / 1e-42 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 145 / 1e-40 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032899 [exp] 0 / 1 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10354 [poplar] [flax] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Potri.003G101200.1 pacid=42785529 polypeptide=Potri.003G101200.1.p locus=Potri.003G101200 ID=Potri.003G101200.1.v4.1 annot-version=v4.1 ATGGCTGATAAAGAAGCAGAGAAACAAGTGATGATCGAAGAAGATAAGGAGAAATGGTTAAAGCACTACTCATCGAATCATCAAATACTGTTGGTTGGTG ATGGAGATTTCTCGTTCTCTTTGAGCTTGGCTCTTTCTTTTGGCTCTGGTTCTAACATTGTTGCTTCCTCTCTTGACACATCTGATGTCTTGATTAAGAA ATACAAGAAAGCAAAGTCAAATCTGGAAAATCTAGCGAAGCTGAAAGCATCTACCTTACATGGAGTGGACGCAACCAAAATGAAGCTTCACCCGGATTTG AGGATGCGAAAGTTTGATCGGATTATCTTCAACTTTCCTCATGCAGGCTTTCATGGAAAGGAAGACAATATTAAACTGATTGAGAAGCATAGGAATCTTG TGCGGGGCTTCTTCAGGAATGCAAAAAGCATGCTACGAGCAGATGGGGAAATTCATGTAAACCACAAAACAACAGCTCCATTTTGCCATTGGAATATCGA GGAACTTGCACGGAGAAACTCTTTAGTATTAATTGAACGTGTTGAATTTAAGATTGAAGACTATCCAGGTTACAACAATAAGAGAGGAGATAGCAATAGA TGTGATGAACCCTTTCCTTTGGGAGAGTGCAGTACCTTCAAATTTAGATTCTCTCATGCTGCTAAGATGTCTAAAGCAACTAGTCACTTGGGTTTTGCCG GCAAAAGATGTCCGCAACTTCATGACAATCCAATAAAGATGTATCATCAGCCAAGTTTATTCAACCACATGCATCCTCAGCCAACTGTTTTCAACTACAA ACATAGGCAGCCAACTTTATTCAAGCACACACATCCTCAGCCAATTTTATTCGAGCACAAATGTCCTCAGCCAACTTCATTCAATCGAATGCATCCCCAG CCAGCCTTGTTCAATCAGGTATATTCTCAAACAAGTCTCGCCACAAATATGAATGGCTTTCCAGGCTATTTGCAATCAACTTCTACAATTAGCATCGAAA AGGCTGATGACTTTAATGGCTACCACAATCATACCTTGGAACCACATGGTAGAACTGTCAATCATGTGGACTGCTCTTATAATGACTATAAAATCTACAT GCCAGAAGCACCAGGAAGAACCTTGGAAGGTGATCTCTATGTGTCGCCTGAGCTTCAACATTTAAGCAACATGAGATCAGCCCTATGGCGAAGGTTGGTT TTGACTCATGGTCAGCACCCGGAAGCCTCAACAGTTGTCTAG
AA sequence Show only first row Show all	>Potri.003G101200.1 pacid=42785529 polypeptide=Potri.003G101200.1.p locus=Potri.003G101200 ID=Potri.003G101200.1.v4.1 annot-version=v4.1 MADKEAEKQVMIEEDKEKWLKHYSSNHQILLVGDGDFSFSLSLALSFGSGSNIVASSLDTSDVLIKKYKKAKSNLENLAKLKASTLHGVDATKMKLHPDL RMRKFDRIIFNFPHAGFHGKEDNIKLIEKHRNLVRGFFRNAKSMLRADGEIHVNHKTTAPFCHWNIEELARRNSLVLIERVEFKIEDYPGYNNKRGDSNR CDEPFPLGECSTFKFRFSHAAKMSKATSHLGFAGKRCPQLHDNPIKMYHQPSLFNHMHPQPTVFNYKHRQPTLFKHTHPQPILFEHKCPQPTSFNRMHPQ PALFNQVYSQTSLATNMNGFPGYLQSTSTISIEKADDFNGYHNHTLEPHGRTVNHVDCSYNDYKIYMPEAPGRTLEGDLYVSPELQHLSNMRSALWRRLV LTHGQHPEASTVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	0	1
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Potri.011G054000 [exp]	1.41	0.7849
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.002G130800 [exp]	1.73	0.7763
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	8.06	0.7909
					Potri.001G103200 [exp]	12.72	0.7500
AT1G60160			Potassium transporter family p...		Potri.008G147300 [exp]	16.15	0.7395
AT1G15170			MATE efflux family protein (.1...		Potri.008G126500 [exp]	17.88	0.7441
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	19.07	0.7456
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	29.79	0.7010
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	32.49	0.6674
AT1G15780			unknown protein		Potri.003G014000 [exp]	38.20	0.7080

Compare expression of checked genes

Potri.003G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.