Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31880 434 / 8e-153 BRX, NIP3;1, NLM9 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) AT2G35600 412 / 2e-144 BRXL1, ATBRXL1, BRX-LIKE1 ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BREVIS RADIX-like 1 (.1) AT3G14000 318 / 5e-107 ATBRXL2, BRX-LIKE2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) AT1G54180 311 / 9e-105 ATBRXL3, BRX-LIKE3 ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, BREVIS RADIX-like 3 (.1.2) AT5G20540 286 / 4e-94 ATBRXL4, BRX-LIKE4 BREVIS RADIX-like 4 (.1) AT2G21030 161 / 1e-48 unknown protein AT5G12350 88 / 8e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 86 / 4e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 76 / 9e-15 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 69 / 2e-12 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131800 [exp] 614 / 0 AT1G31880 462 / 4e-164 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Potri.006G144900 [exp] 320 / 1e-107 AT5G20540 422 / 2e-147 BREVIS RADIX-like 4 (.1) Potri.001G170800 [exp] 317 / 2e-106 AT3G14000 467 / 2e-165 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.003G063200 [exp] 314 / 2e-105 AT3G14000 492 / 4e-175 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Potri.018G064900 [exp] 306 / 5e-102 AT5G20540 426 / 1e-148 BREVIS RADIX-like 4 (.1) Potri.002G070300 [exp] 89 / 6e-19 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 89 / 6e-19 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G026900 [exp] 80 / 4e-16 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 79 / 1e-15 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030349 [exp] 440 / 1e-155 AT1G31880 410 / 5e-144 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10007898 [exp] 388 / 8e-136 AT1G31880 363 / 1e-126 BREVIS RADIX, DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1) Lus10008459 [exp] 279 / 1e-91 AT3G14000 441 / 1e-155 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10000884 [exp] 277 / 8e-91 AT3G14000 439 / 3e-154 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.1), DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (.2) Lus10017164 [exp] 256 / 6e-83 AT5G20540 457 / 1e-161 BREVIS RADIX-like 4 (.1) Lus10021565 [exp] 247 / 6e-79 AT5G20540 420 / 1e-146 BREVIS RADIX-like 4 (.1) Lus10036030 [exp] 89 / 6e-19 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 87 / 3e-18 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10028600 [exp] 86 / 7e-18 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 86 / 9e-18 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3 PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G101500.2 pacid=42785514 polypeptide=Potri.003G101500.2.p locus=Potri.003G101500 ID=Potri.003G101500.2.v4.1 annot-version=v4.1 ATGTTTACGTGCATAGCGTGTACCAAGCCAGTGGCAGAGGATGGACGGGGAGAAGAAGGAGGAGCGCGTGGAAGTGGTACCCCAAGTACAAAAGAAGCCG TCAAAAGCCTCACTTCACAGATCAAGGACATGGCACTGAAAATGTCTGGTGCTTACAAGCAATGCAAGCCCTGCACAAGTCCCAGCAGCTACAAGAAAGG ACAGCGACCTTACCCTGACTTTGATGCAGCTTCAGAAGGGGTTCCATACCCCTATTTTGGAGGTGGAAGCTCAAGCTCAACCCCAGCCTGGGACTTTACT ACTCCCAAACACAATCGAGGTACTAGAGCTGACTCTAGGTTTTCTACTTTGTATGGTGGAGACCGGACCCCTGGAGGAGCAGAGTCTTGTGATGTGGTGC TGGAGGATGAGGATGAGCCCAAGGAATGGATGGCACAGGTGGAGCCAGGTGTTCACATTACTTTCGTGTCTCTCCCTAATGGGGGAAATGATCTAAAGCG TATTCGTTTCAGCCGAGAGATGTTTAATAAGTGGCAAGCTCAGCGATGGTGGGGTGAGAACTATGACAGAATCACGGAGCTCTATAATGTCCAGAGATTT AATCGTCAAGCTCTTCACACTCCCCCGAGGTGTGAGGATGAGCAAAGAGATTCCTCCTACTCAAGGCTGGAATCTGCAAGGGAAAGCCCTATGGCTCCAT CTTTTACCCCAAGAAACTACTATAAACCTGCTGGAAGTAAAGGTTATTTCCCATCTGATACTATGGACCAAGGTGGCAGCCATCACTACCACGCTGGTTC AAGTAGCTATGGTATGGGGGGGCCAAGATTCGAGGCATCTTCTTTAGAGGCATCACGGACAACTACATCATCTAGAGATGAGCCTTCTATTTCAGTTAGC AATGCTAGTGACCTGGAGACAGAATGGGTTGAGCAAGATGAGCCAGGGGTTTACATCACAATCAGACAACTTGCCGATGGCACCAGGGAGCTCAGGCGTG TCAGATTCAGCCGCGAACAATTCGGAGAAGTGCACGCGAAGACATGGTGGGAACAGAATAGAGAAAGAATACAAGCTCAGTACCTATAA
AA sequence Show only first row Show all	>Potri.003G101500.2 pacid=42785514 polypeptide=Potri.003G101500.2.p locus=Potri.003G101500 ID=Potri.003G101500.2.v4.1 annot-version=v4.1 MFTCIACTKPVAEDGRGEEGGARGSGTPSTKEAVKSLTSQIKDMALKMSGAYKQCKPCTSPSSYKKGQRPYPDFDAASEGVPYPYFGGGSSSSTPAWDFT TPKHNRGTRADSRFSTLYGGDRTPGGAESCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRITELYNVQRF NRQALHTPPRCEDEQRDSSYSRLESARESPMAPSFTPRNYYKPAGSKGYFPSDTMDQGGSHHYHAGSSSYGMGGPRFEASSLEASRTTTSSRDEPSISVS NASDLETEWVEQDEPGVYITIRQLADGTRELRRVRFSREQFGEVHAKTWWEQNRERIQAQYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.003G101500 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	1.00	0.9280
AT4G25835			P-loop containing nucleoside t...		Potri.001G231200 [exp]	1.41	0.9247
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	5.47	0.9023
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	7.93	0.8885
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	8.30	0.9167
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	9.48	0.8746
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.003G096300 [exp]	9.53	0.8801
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.001G383600 [exp]	9.79	0.8198
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	10.00	0.9144
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	11.48	0.8841

Compare expression of checked genes

Potri.003G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.