Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19110 690 / 0 Protein kinase superfamily protein (.1.2.3) AT5G45430 601 / 0 Protein kinase superfamily protein (.1.2) AT4G13020 387 / 3e-132 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT3G48750 213 / 7e-66 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G73690 213 / 2e-64 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 211 / 2e-64 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G18040 209 / 5e-63 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT5G63370 200 / 8e-59 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT2G18170 197 / 9e-59 ATMPK7 MAP kinase 7 (.1) AT1G59580 197 / 1e-58 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190200 [exp] 568 / 0 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 498 / 2e-176 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 495 / 2e-175 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.002G247500 [exp] 396 / 3e-135 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.001G035400 [exp] 317 / 2e-107 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.004G133500 [exp] 215 / 2e-66 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.015G092100 [exp] 203 / 4e-58 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G052100 [exp] 196 / 9e-58 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.002G003400 [exp] 193 / 1e-57 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008303 [exp] 696 / 0 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 692 / 0 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 597 / 0 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 394 / 2e-134 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10017371 [exp] 206 / 9e-62 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10040530 [exp] 206 / 1e-61 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10007921 [exp] 200 / 1e-59 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 198 / 6e-59 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 197 / 2e-58 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 195 / 9e-58 AT4G01370 632 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G101600.1 pacid=42785700 polypeptide=Potri.003G101600.1.p locus=Potri.003G101600 ID=Potri.003G101600.1.v4.1 annot-version=v4.1 ATGGAAAGGTACAAGTTAATCAAGGAAGTTGGCGATGGAACATTTGGGAGTGTGTGGAGAGCAATTAATAAGCAATCTGGTGAAGTTGTGGCAATTAAAA AGATGAAGAAGAAATATTACTCATGGGAAGAGTGTGTGAATTTGAGAGAAGTGAAGTCATTGCGGAAAATGAATCATCCGAATATTGTGAAGCTCAGAGA AGTAATCCGGGAAAATGACATTTTATATTTTGTTTTTGAGTACATGGAATGCAACCTTTATCAACTTACTAAAGACAGGGAAAAGCTATTTTCAGAAGCT GAAGTGAGGAATTGGTGTTTTCAAGTATTTCAAGGTCTTGCTTACATGCACCAGCGTGGGTATTTTCATCGTGACCTTAAGCCAGAGAACCTGTTGGTCT CAAAATCCATAATTAAAATTGCTGATTTTGGTCTTGCACGAGAAGTCAATTCACAGCCTCCATATACGGAGTATGTCTCCACGCGGTGGTATAGAGCACC TGAAGTGTTGCTTCAGTCATACCTGTACAGCTCTAAAGTTGATATGTGGGCAATGGGTGCCATCATGGCTGAGTTATTCACCCTTCGACCGCTTTTTCCT GGTACCAGTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGCAGTCCAACAACTGACACCTGGGCTGATGGGCTTAATCTTGCAAGGGCTATTA ACTACCAATTTCCACAGTTTGCTGGTGTTCACCTTCCCACACTTATCCCATCAGCAAGTGAGGATGCAATCAACCTTATCAAGTCGCTTTGCTCCTGGGA TCCTTGCACGAGGCCTTCAGCTGCAGATGCTCTACAACATCCTTTCTTTCAGAGTTGTTTTTATGTGCCACCATCCCTACGCCCCAGAGCAGCCATCACA AGAACACCTGCATCTGCTGGAACAAAGGGAGGACTGGAGCAACAATGTGGGAGGAATTTACCAGGGGCTTTGTCTAATTCTAAGCTTACTAACAGTTTTC CTTCTCCAAAGTTACATGCTTCTTTGAGTACAGGGGTACAACGCAAGTTGGATATGGTTAACCAGGATTCACGGAAGCCCGACAAGTCCTTGAAGAGCTC TACAAAACCAAGATATCAACCACCAGGGAGGAAAAGCCCAACATTTATGAGCAAAGGGAGAGTTGCACGTGGAGCATCAGAAACAGCTGATAAGTTTGCA AGCATGACAATTGCCTCTCGTCGGCAGTCTCTGGGGCAGCAGCCCAAGCCACCTACTATGAAGGCTGGAGTACAGTGGACTGGAGAATCTGGTGGGATGT TTCTTAGGCCAACCCAACAATTCCCACATGGCAGAAACTATCCAAGGAAGGTTGTGGGATGA
AA sequence Show only first row Show all	>Potri.003G101600.1 pacid=42785700 polypeptide=Potri.003G101600.1.p locus=Potri.003G101600 ID=Potri.003G101600.1.v4.1 annot-version=v4.1 MERYKLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLREVIRENDILYFVFEYMECNLYQLTKDREKLFSEA EVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKSIIKIADFGLAREVNSQPPYTEYVSTRWYRAPEVLLQSYLYSSKVDMWAMGAIMAELFTLRPLFP GTSEADEIYKICSVIGSPTTDTWADGLNLARAINYQFPQFAGVHLPTLIPSASEDAINLIKSLCSWDPCTRPSAADALQHPFFQSCFYVPPSLRPRAAIT RTPASAGTKGGLEQQCGRNLPGALSNSKLTNSFPSPKLHASLSTGVQRKLDMVNQDSRKPDKSLKSSTKPRYQPPGRKSPTFMSKGRVARGASETADKFA SMTIASRRQSLGQQPKPPTMKAGVQWTGESGGMFLRPTQQFPHGRNYPRKVVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19110			Protein kinase superfamily pro...		Potri.003G101600 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.001G416300 [exp]	4.12	0.9326	ATK2.2
AT1G13635			DNA glycosylase superfamily pr...		Potri.008G112300 [exp]	6.92	0.9132
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	8.36	0.9243
AT4G31570			unknown protein		Potri.018G008600 [exp]	9.05	0.8694
AT5G62580			ARM repeat superfamily protein...		Potri.015G069200 [exp]	13.63	0.9024
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	13.96	0.8904
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Potri.001G372000 [exp]	15.49	0.9102	Pt-ZAC.1
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	16.73	0.9100
AT1G22060			unknown protein		Potri.006G120400 [exp]	16.97	0.9011
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	21.44	0.9002

Compare expression of checked genes

Potri.003G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.