Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31850 1036 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 1036 / 0 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G10440 534 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 531 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 526 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 518 / 6e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 504 / 1e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 492 / 7e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 474 / 6e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00740 468 / 1e-158 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131400 [exp] 1186 / 0 AT1G31850 1026 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.015G139000 [exp] 550 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 542 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 540 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 536 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 533 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 531 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 516 / 2e-177 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 498 / 2e-170 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034729 [exp] 1063 / 0 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10033277 [exp] 1033 / 0 AT1G31850 965 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10005764 [exp] 538 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 520 / 5e-179 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 517 / 7e-178 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 517 / 1e-177 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 510 / 1e-174 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 509 / 2e-174 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 504 / 7e-173 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 503 / 2e-172 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G102400.4 pacid=42785397 polypeptide=Potri.003G102400.4.p locus=Potri.003G102400 ID=Potri.003G102400.4.v4.1 annot-version=v4.1 ATGAAGCATAAAGATGGAAAACCAGGGTCCCATCCTGATAAAAACTCCAGGGCTTTTCCCATGGCGATGATGTTTGTGGTACTCTGTGGGCTTTCATTCT ATCTTGGTGGAATTTTCTGTTCTGAGAGAGATAAAATTGAGGTCAAGGACGTGGCAAAGGTGGTCTCCTCACCCAAGGAATCGTCAGTTGCTCCTCTCCA AATTAAATCCACTGCATTTCCTGAATGCAGCAGCGACTATCAAGACTACACTCCATGCACGGATCCAAGGAGGTGGAAGAAATATGGTAATCATCGGCTT ACTTTCATGGAACGCCACTGTCCTCCGGTTTTTGAAAGGAAGGAATGCTTAGTTCCACCACCGGAAGGGTATAAGCCTCCAATCACATGGCCAAAGAGCA GGGATCAATGTTGGTACAGGAATGTACCATATGATTGGATTAACAAGCAGAAATCTAACCAGAACTGGCTGAGAAAAGAGGGGGAGAAGTTCCTCTTTCC TGGTGGGGGCACTATGTTTCCCAGAGGAGTGGGTGCCTATGTTGATCTGATGCAAGATCTTATCCCTGAAATGAAAGATGGGACCATTCGCACTGCCATT GATACTGGGTGTGGGGTTGCTAGCTGGGGAGGTGATCTATTAGATCGCGGGATTCTAACTGTTTCTCTTGCCCCAAGAGATAACCATGAGGCTCAAGTCC AGTTTGCATTAGAACGTGGAATTCCTGCAATTCTCGGCATCATTTCCACACAAAGACTTCCCTTCCCATCAAATGCATTCGATATGGCTCATTGCTCCAG ATGTCTTATCCCATGGACAGAATTTGGTGGAATTTATCTTCTGGAAGTTCACCGTATTCTCCGTCCCGGTGGCTTCTGGGTTCTGTCTGGTCCTCCTGTT AACTATGAAAACCATTGGCGAGGCTGGAATACTACTGTGGAAGAGCAGAAATCTGATTATGAAAAGTTGCAAGAACTGCTGACTTCGATGTGCTTCAAAT TGTATGACAAAAAGGATGACATTGCTGTGTGGCAGAAAGCTTCAGATAATAGTTGCTACAGCAAACTTACCTATCCCGATGCCTACCCACCTAAGTGCGA TGATAGCCTTGAACCAGATTCAGCATGGTACACTCCATTCCGCCCTTGCGTTGTTGTTCCAAGCCCAAGAATTAAGAAATCAGTTATGGAGTCCATCCCC AAATGGCCACAGAGGTTGCATGTTACACCTGAACGCATTTTAGATGTTCATGGTGGGAGTGCTAGTGCTTTTAAGCATGATGACAGCAAGTGGAAGATTC GTGCAAAGCACTACAAGAAGTTGCTCCCAGCACTTGGGTCTAATAAGATAAGAAATGTTATGGACATGAATACAGTTTATGGAGGTTTTGCTGCAGCTGT GATTGATGATCCCCTGTGGGTCATGAATGTGGTCTCTTCCTATGCTGCCAACACACTTCCTGTTGTTTTTGACCGTGGCCTCATCGGAACTTTTCATGAT TGGTGTGAAGCTTTCTCAACTTATCCTCGAACTTATGATCTCCTTCACCTTGATGGCCTCTTCACTGCAGAAAGCCACAGATGTGATATGAAGTATGTGC TTTTGGAGATGGATCGGATCCTAAGACCTGCGGGTTATGCAATAATACGAGAATCCAGCTATTTCATGGATGCCATTTCTACCATTGCCAGGGGTATGAG GTGGAGCTGCCGTGGAGAAGACACCGAATATGGAGTTGAGAAAGAGAAAATATTGATTTGCCAGAAGAAACTCTGGCATTCCTCTAACCAAAGTTCAAGA TGA
AA sequence Show only first row Show all	>Potri.003G102400.4 pacid=42785397 polypeptide=Potri.003G102400.4.p locus=Potri.003G102400 ID=Potri.003G102400.4.v4.1 annot-version=v4.1 MKHKDGKPGSHPDKNSRAFPMAMMFVVLCGLSFYLGGIFCSERDKIEVKDVAKVVSSPKESSVAPLQIKSTAFPECSSDYQDYTPCTDPRRWKKYGNHRL TFMERHCPPVFERKECLVPPPEGYKPPITWPKSRDQCWYRNVPYDWINKQKSNQNWLRKEGEKFLFPGGGTMFPRGVGAYVDLMQDLIPEMKDGTIRTAI DTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEVHRILRPGGFWVLSGPPV NYENHWRGWNTTVEEQKSDYEKLQELLTSMCFKLYDKKDDIAVWQKASDNSCYSKLTYPDAYPPKCDDSLEPDSAWYTPFRPCVVVPSPRIKKSVMESIP KWPQRLHVTPERILDVHGGSASAFKHDDSKWKIRAKHYKKLLPALGSNKIRNVMDMNTVYGGFAAAVIDDPLWVMNVVSSYAANTLPVVFDRGLIGTFHD WCEAFSTYPRTYDLLHLDGLFTAESHRCDMKYVLLEMDRILRPAGYAIIRESSYFMDAISTIARGMRWSCRGEDTEYGVEKEKILICQKKLWHSSNQSSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	0	1
AT4G02100			Heat shock protein DnaJ with t...		Potri.002G197300 [exp]	2.00	0.8753
AT1G12230			Aldolase superfamily protein (...		Potri.001G120400 [exp]	3.46	0.8362
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	4.89	0.8681
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	5.29	0.8450
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	6.70	0.8429
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	8.71	0.7974
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	9.16	0.7747
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	13.49	0.8341
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.008G175301 [exp]	14.28	0.7272
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	20.19	0.8278

Compare expression of checked genes

Potri.003G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.