Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45390 383 / 9e-135 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 205 / 1e-64 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G02560 190 / 8e-59 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G11750 168 / 1e-50 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT5G23140 156 / 2e-46 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) ATCG00670 138 / 4e-40 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G12410 136 / 4e-38 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT4G17040 135 / 2e-37 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 113 / 6e-29 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 111 / 5e-28 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G130601 [exp] 286 / 1e-97 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G092100 [exp] 209 / 7e-66 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.002G195200 [exp] 186 / 2e-57 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 186 / 3e-57 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.007G071700 [exp] 170 / 3e-51 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 169 / 4e-51 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.004G152900 [exp] 169 / 6e-51 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 169 / 7e-51 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 130 / 4e-36 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012156 [exp] 304 / 8e-104 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10007589 [exp] 303 / 3e-103 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10010979 [exp] 179 / 4e-54 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1) Lus10000449 [exp] 177 / 2e-53 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10010003 [exp] 171 / 2e-51 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 170 / 3e-51 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10002422 [exp] 166 / 2e-49 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 166 / 6e-49 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010196 [exp] 162 / 2e-48 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 161 / 1e-47 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00574 [poplar] [flax] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Potri.003G103300.2 pacid=42784856 polypeptide=Potri.003G103300.2.p locus=Potri.003G103300 ID=Potri.003G103300.2.v4.1 annot-version=v4.1 ATGGATTTGCTCTCGCTCTCTTCCTCCACAGCAACCCCGCTCTTTTCCTCTCTAAAACCCACTCTCTCTCCCCACCACAACCTAAAACCACCTGCTTCAC CTTTCCCCTTCCTTTTCAAACCCCTAACACCATCTTCTCCAAAACTTTCACCTCTCAAAACCTCCCTTAAATCCTCCCTAACCTTAACCCCAATTCCCCA ACTGGCCTCCCCTCAAACACCGGCCACCTCCATGAGAGGGGCCGAGACGGACGCTATGGGCCTCTTGTTGAGGGAAAGGATTGTGTTTCTAGGGAACAAT ATAGATGATTTCGTGGCTGATGCTATTATTAGTCAGCTGTTGCTTCTTGATGCCCAGGATCCTACTAAAGATATCCGTCTCTTCGTTAACTGTCCTGGTG GTTCTCTTAGTGCTTCAATGGCTATCTATGACGTGGTGCAGCTTGTGAGGGCTGATGTTTCCACAATTGCCCTTGGCATTTCAGCTTCAACAGCTTCTAT AATTCTTGGAGGTGGAACGAAAGGCAAACGTTTTGCAATGCCCAACACACGGATAATGATTCATCAACCTCTTGGAGGAGCTAGTGGGCAAGCAATAGAT GTGGAAATTCAAGCACGAGAAATTATGCATAACAAGAATAATATAATTAGAATTGTTTCAGGTTTCACTAGTCGCACGGTTGAGCAAGTGCAAAAAGATA TGGATAGAGATCGTTACATGTCTCCAATTGAAGCAGTTGAATATGGAATAATTGATGGAGTTATTGATAGAGATAGCATCATTCCTTTGGCTCCAGTGCC AGAAAGAGTGACACCGACCCTGAATTATGAGGACATGCGTAAAGATCCAATGAAATTCTTGAATCCTGATGTCCCTGATGATGAGATATACTAG
AA sequence Show only first row Show all	>Potri.003G103300.2 pacid=42784856 polypeptide=Potri.003G103300.2.p locus=Potri.003G103300 ID=Potri.003G103300.2.v4.1 annot-version=v4.1 MDLLSLSSSTATPLFSSLKPTLSPHHNLKPPASPFPFLFKPLTPSSPKLSPLKTSLKSSLTLTPIPQLASPQTPATSMRGAETDAMGLLLRERIVFLGNN IDDFVADAIISQLLLLDAQDPTKDIRLFVNCPGGSLSASMAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAID VEIQAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYGIIDGVIDRDSIIPLAPVPERVTPTLNYEDMRKDPMKFLNPDVPDDEIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.003G103300 [exp]	0	1
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	4.58	0.9662	NAP6.2
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	4.79	0.9720	Pt-RPL1.1
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	5.19	0.9643
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	6.48	0.9653
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	6.63	0.9681
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Potri.017G007300 [exp]	11.83	0.9662
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	15.19	0.9621
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	16.61	0.9620
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	17.74	0.9657
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	18.16	0.9611	Pt-LAF6.1

Compare expression of checked genes

Potri.003G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.