Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19150 234 / 1e-77 Ankyrin repeat family protein (.1.2) AT5G66055 83 / 7e-18 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT3G24530 82 / 2e-17 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT2G03430 79 / 2e-17 Ankyrin repeat family protein (.1) AT5G40160 67 / 1e-12 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G12320 64 / 1e-12 ankyrin repeat family protein (.1) AT1G05640 67 / 2e-12 Ankyrin repeat family protein (.1) AT3G01750 63 / 5e-11 Ankyrin repeat family protein (.1) AT1G07710 61 / 2e-10 Ankyrin repeat family protein (.1) AT3G09890 59 / 3e-10 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G130500 [exp] 390 / 9e-139 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.006G158600 [exp] 79 / 2e-16 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.010G161300 [exp] 77 / 2e-16 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 71 / 6e-14 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.018G081000 [exp] 71 / 7e-14 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.007G060400 [exp] 69 / 4e-13 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.010G185200 [exp] 68 / 7e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 68 / 7e-13 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 68 / 9e-13 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001414 [exp] 244 / 4e-81 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001048 [exp] 237 / 4e-78 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10034913 [exp] 83 / 8e-18 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10023642 [exp] 82 / 1e-17 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 78 / 3e-17 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10043218 [exp] 77 / 1e-15 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10014522 [exp] 70 / 1e-13 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10021508 [exp] 67 / 4e-13 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10009696 [exp] 66 / 4e-13 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10041853 [exp] 69 / 5e-13 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.003G103400.2 pacid=42785134 polypeptide=Potri.003G103400.2.p locus=Potri.003G103400 ID=Potri.003G103400.2.v4.1 annot-version=v4.1 ATGAATCAGAAAGAAAGAGACTCGGAGAATAAAATGGGTAGAAACAGAGGAGGAGGAGGAGGAGGAGGAGACACGGAGCTTCACGCTGCGGCGAGGTCCG GTGACATGAAAGCGGTTGAGTCAATTGTCAGCTCAAACCCTTTGGCTATTAACTCTAGAGATAAGCACTCTAGAACCCCATTGCATTTAGCAGCATGGTC AGGGCAGGCAGAGGTGGTGAGTTATCTCTGTAAGCACAAGGCTGATGTTGGTGCTGCTGCCATGGATGACATGGGAGCAATTCACTTTGCCGCCCAAAAG GGCCATTCAGAAGTTGTCCGAACTCTGCTTTCATCTGGGGCCTCCATCAAAGCGTCCACCAGAAAGGGCCTTACTCCACTTCACTATGCTGTTCAAGGGT CCCATCTGGAGCTAGTCAAGTATTTGGTAAGGAAAGGAGCAAGCCTTAATGTCAGGACAAAAGCAGGAATGACTCCTCTTGATCTGGCAACCAATGAAGA AATCCACGTGTTTCTGGAAGAAAGCGAAAGGACACCTAAGAAAGGAACCTTGGACGGAAAAGACAAACCTGAAGCATCTGAACCAAAGACATCGTTGCAG GATAAATCAGAGAATTCTGGTGGTGAAGCTAATGCTGGAGAGCATGAAGAACAGGAGAATAGAAATGTAAAGAGGAAGGGCGAAGAAGATGATGCTAAGG AAACTTCATCGGAACCGAAAAGAGCCAGAGTAGCACTTAATCATCTTCTGAGTGCAGATGACACTCAGGAAGAAAATCTGTAA
AA sequence Show only first row Show all	>Potri.003G103400.2 pacid=42785134 polypeptide=Potri.003G103400.2.p locus=Potri.003G103400 ID=Potri.003G103400.2.v4.1 annot-version=v4.1 MNQKERDSENKMGRNRGGGGGGGDTELHAAARSGDMKAVESIVSSNPLAINSRDKHSRTPLHLAAWSGQAEVVSYLCKHKADVGAAAMDDMGAIHFAAQK GHSEVVRTLLSSGASIKASTRKGLTPLHYAVQGSHLELVKYLVRKGASLNVRTKAGMTPLDLATNEEIHVFLEESERTPKKGTLDGKDKPEASEPKTSLQ DKSENSGGEANAGEHEEQENRNVKRKGEEDDAKETSSEPKRARVALNHLLSADDTQEENL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19150			Ankyrin repeat family protein ...		Potri.003G103400 [exp]	0	1
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Potri.010G249700 [exp]	2.00	0.8053
AT5G10320			unknown protein		Potri.005G073600 [exp]	8.06	0.7219
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G010400 [exp]	9.00	0.7638
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	11.66	0.7339
AT2G24030			zinc ion binding;nucleic acid ...		Potri.006G182601 [exp]	12.24	0.7514
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	14.28	0.7848
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Potri.018G008000 [exp]	19.44	0.6611
AT5G17240		SDG40	SET domain group 40 (.1)		Potri.004G081400 [exp]	19.74	0.6790
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	20.09	0.7548
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	21.90	0.7261

Compare expression of checked genes

Potri.003G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.