Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69490 117 / 4e-31 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G01720 115 / 5e-30 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 113 / 1e-29 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G52890 113 / 4e-29 NAC ANAC019 NAC domain containing protein 19 (.1) AT3G15500 113 / 5e-29 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT4G27410 110 / 5e-28 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G15510 110 / 1e-27 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G04060 107 / 1e-26 NAC ANAC046 NAC domain containing protein 46 (.1) AT3G04070 107 / 1e-26 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT5G08790 106 / 1e-26 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052200 [exp] 195 / 2e-58 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G256600 [exp] 187 / 1e-55 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.009G052300 [exp] 134 / 2e-36 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.008G089000 [exp] 115 / 4e-30 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.002G081000 [exp] 112 / 3e-29 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.006G129400 [exp] 112 / 2e-28 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.007G099400 [exp] 110 / 3e-28 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 110 / 4e-28 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G404100 [exp] 110 / 6e-28 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003847 [exp] 115 / 8e-30 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10006547 [exp] 116 / 1e-29 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 115 / 3e-29 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10037156 [exp] 113 / 3e-29 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10036773 [exp] 113 / 4e-29 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10025690 [exp] 113 / 5e-29 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10018142 [exp] 113 / 5e-29 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10042731 [exp] 111 / 2e-28 AT1G01720 414 / 7e-147 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10043095 [exp] 111 / 7e-28 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10032657 [exp] 111 / 8e-28 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.003G103500.1 pacid=42784659 polypeptide=Potri.003G103500.1.p locus=Potri.003G103500 ID=Potri.003G103500.1.v4.1 annot-version=v4.1 ATGTACTTTTTCACACCAAAGAACAGAAAGTACAGGAATGGAAGTAGACCTAATCGAGCCGCTGACGGTGGATACTGGAAAGCCACTGGAAAAGATAAGA CAGTCAAATACAGGGGCACTCCAGTTGGAAAGAGGAAGACACTGGAGTTCTATACTGGAAAGGCTCTACAGGGTGAAAAAACCGACTGGAAAATGCATGA GTTTACAGTGAATGATCCAGCTCCTATTCATCAAGTCAGAAATACTAGAGATTACATGAGGCTGGATGACTGGGTTTTATGCCAGATTTACAAGAAATCA AAGAAGCCTAAAGATGTCAGAAATCGACAAAGAGACGAGGAAAATTCAACACTAACTGCTATGGATAATGTTGATTACGTAAATAACCATGATGAAGATA GGACTGATCTGCCTGTTATGGATGCTGGCTATGTTGGGGAGATGGATAATGTTGGTGCTGATGCTGTTTTCACCCATGACTATAGCCAACAACAGATTGC TTCAAGTGAATTCCCTGCTGATTTTAACCTCCATGCTGCTTCATATAGCGGCATGTTTCCCAGTTTGGCCGAGACATGTGGAGATCCTGCCTCAGTATTT TCCAATTCTGACAACCTGTCAACCCTGGATGATCTTTTGAATCCTGCAAACTTTCATTGGAACATTGATGATCCATTTTTTGACCTCCATACTAGCGTGC CAAATAATATTCCAGGAAATCCTGTTCCTGCTCCCGGCAACATCGCAAATCCTGCTTCTCCTTGCAACCTTCCCGCAGCTAATCATGTTCCTTCTTCGCG CTATCTTCCTTCGGCATATCTTGCTCCTCCTGGCCACCAAATCCTGCAACCAGTCAGTCAACTTCAGCAGCAGATGTTGTGCCAAAAAACAGCCTGCTCT AACGAATAG
AA sequence Show only first row Show all	>Potri.003G103500.1 pacid=42784659 polypeptide=Potri.003G103500.1.p locus=Potri.003G103500 ID=Potri.003G103500.1.v4.1 annot-version=v4.1 MYFFTPKNRKYRNGSRPNRAADGGYWKATGKDKTVKYRGTPVGKRKTLEFYTGKALQGEKTDWKMHEFTVNDPAPIHQVRNTRDYMRLDDWVLCQIYKKS KKPKDVRNRQRDEENSTLTAMDNVDYVNNHDEDRTDLPVMDAGYVGEMDNVGADAVFTHDYSQQQIASSEFPADFNLHAASYSGMFPSLAETCGDPASVF SNSDNLSTLDDLLNPANFHWNIDDPFFDLHTSVPNNIPGNPVPAPGNIANPASPCNLPAANHVPSSRYLPSAYLAPPGHQILQPVSQLQQQMLCQKTACS NE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.003G103500 [exp]	0	1
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	6.40	0.9486
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	9.89	0.9427
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.004G073600 [exp]	12.60	0.9407
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	13.56	0.9381	Pt-HSP17.13
					Potri.010G110751 [exp]	16.94	0.9367
AT1G03070			Bax inhibitor-1 family protein...		Potri.005G214000 [exp]	20.59	0.9361
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	21.84	0.9321
					Potri.004G234150 [exp]	23.36	0.9263
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	23.91	0.9283
AT1G52560			HSP20-like chaperones superfam...		Potri.001G192600 [exp]	25.69	0.9271

Compare expression of checked genes

Potri.003G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.