Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31810 729 / 0 AFH14 Formin Homology 14 (.1) AT2G25050 526 / 5e-166 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G07740 520 / 5e-159 actin binding (.1) AT3G32400 473 / 6e-154 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G58160 483 / 5e-148 actin binding (.1) AT5G07770 428 / 7e-134 Actin-binding FH2 protein (.1.2) AT5G07650 397 / 5e-121 Actin-binding FH2 protein (.1) AT5G07780 380 / 4e-119 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 376 / 4e-113 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 255 / 2e-76 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185601 [exp] 541 / 1e-177 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G019600 [exp] 563 / 2e-176 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G263700 [exp] 551 / 9e-173 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G108000 [exp] 533 / 5e-168 AT5G58160 600 / 0.0 actin binding (.1) Potri.012G067900 [exp] 536 / 8e-167 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 526 / 2e-162 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 469 / 4e-152 AT5G58160 598 / 0.0 actin binding (.1) Potri.007G054900 [exp] 138 / 7e-33 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 125 / 6e-29 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023804 [exp] 804 / 0 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 801 / 0 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10007447 [exp] 530 / 2e-166 AT5G58160 604 / 0.0 actin binding (.1) Lus10035830 [exp] 523 / 1e-162 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 523 / 4e-161 AT5G58160 608 / 0.0 actin binding (.1) Lus10024450 [exp] 511 / 5e-159 AT5G58160 600 / 0.0 actin binding (.1) Lus10015724 [exp] 506 / 1e-157 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 442 / 9e-133 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 263 / 2e-78 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 186 / 1e-53 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain CL0154 [poplar] [flax] C2 PF10409 [poplar] [flax] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Potri.003G103800.3 pacid=42787518 polypeptide=Potri.003G103800.3.p locus=Potri.003G103800 ID=Potri.003G103800.3.v4.1 annot-version=v4.1 ATGTCCCTCCTCAGTAGATTCTTTTACCGGAGACCCCCTGATGGCTTACTCGAATTTGTTGATAGAGTTTACGTGTTTGATTCTTGTTTTTCCACTGATG TATTACCGGATGGAATGTACCAAATTTACCTGCACGAAATAATAACTGAATTATATGAGGAATTTCCGGACTCTTCGTTTCTGGCCTTTAATTTTCGGGA AGGCGAGAAACGGAGTCAGCTTGCAGAAATTTTATGTCAGTATGATGTTACTGTAATGGATTATCCGCGGCAGTATGAGGGTTGTCCATTGCTGCCATTG TCTTTGATTCAGCATTTTCTTCGTGTTTGTGAGAGTTGGCTTTCGAAAGGGAATCATCAGAATGTTATCCTTTTTCACTGTGAGAGAGGGAGTTGGCCAT TGTTAGCATTTCTTTTGGCCAGTTTCTTGATTTTTAGGAAGTTGCATAGTGGTGAGAAGAGGACTCTTGAGATTGTTCATAAAGAGGCTCCTAAAGGGTT CTTGCAGCTCTTGTCGCCACTCAATCCTTTTCCATCTCAACTTCGTTATCTTCAGTATGTGGCTAGGAGAAATATAGCACCTGAGTGGCCACCTCCTGAA CGGGCTCTTTCTTTGGATTGTGTCATTTTTCGTGCCATTCCCAGTTTTGATGCTGGAAATGGGTGTAGGCCAATCATTCGTATTTTTGGTAGGAACTTAC ACACAAAGGGTGGACTTTCTACGCAGATGCTCTTCTCTATGTCTAAGAAGAAGAAGTCTGCCCTTCGGCACTACTGCCAGGCGGACTGTGATGTGATAAA GATTGACATTCAATGTTTGGTGCAAGGAGATGTTGTCTTGGAGTGTCTGCATTTGGACTTGGATTCTGAAAGGGAAGTTATGATGTTTCGTGTAATGTTT AATACCGCTTTTATTCGATCCAATATATTGATGCTCAATTCTGACAATTTGGACATTCTTTGGGATTCAAAAGAGCGGTATCCAAAAGGCTTCCGTGCAG AGGTTCTGTTTGGGGAGGTTGAGAGCATCTCCTCTCCGAAAGCCCCAACTACAATTTTAAATGGTGAGGAAAAAGGTGGATTGCCGATTGAAGCCTTTTC AAGAGTTCAAGAACTATTTAGTGGCGTTGAGTGGGTTGATAGCAGTGACGATGCTGCATTGTGGTTGCTTAAACAGCTATCAGTCATTAGTGATGCCAGA GAATTTTCAAGAATGCAAACTCAAGTGAGTTCATATGCATCACCTGTTGATTCTGAAGATGAAAATAATGCATCTAGCACTGCTGATAGTTCGGATGAAG CATTTGATTATGTTTCCAAGTCTACAGCTGAAGGAATGAAACCATTGATGTCAAATACTGTTGAGTCAGTTCCCTTATCTGCTGAAAGTAATGATCCACA GGATTTGGATCTAACTACAGACCCTCCACCTCAAGTTTCAGTCAAGGGTGTACCATCCTCTCTTCATCAACAATTATCAGTTGCGGGTGTAGGAACTCTG ACTTCTCCATGCCCCCCTCAACCCCCTCCACCACCCCCTTTTGCTCGCACACCACCACCACCACCGCCCCATCCTCCATCTTCTATTTCTAACCAAAGTC CTCTGTCAGTGGCTGCTCCACTAGACCCATACCCTCCTCCCCCCCCTCTGCCACCATCACCTCCTACACGTCCCTCTACTACTACTAGCAATAGTAAATC TCCACCACCACCTCCACCACCACCTCCTCTTCCCAATGTCTCTAGTGGAGATTTATCAACAGCTTCAGTTCCCACTAGTAAAAGAGATATTCCACCACCT CCTTGTCCACCTCCCCCTCCCAACTTCTTCAATAAAGATGCTTCTTTACCACCTGCCTCTCATAATACATGTCTGCTACCACCACCACCTCCTCCTCCTC CTCCTCCTCCTCCTCTTCCTAACTTCAGTAAAGATTCTGGTACACCACCTCCTCCTACCTGCAGAGGCCCACCACCACCACCTCCTCCTCCTCCTCCTCT TCCTAACTTCAGTAAAGATTCTGGTACACCACCTCCTCCCACCTGCAGAGGCCCACCACCACCACCACCACCACCACCTCCTCCACCACCACCTCCTCCA CCACCACCACCTCCTCCACCATCACCACCTCCTCCACCTCCCCTCTTGAGTTCTTCTAAAGGCCCACCACCTCCTCCTATTTCTTCTAAAACAAGACAAT CCTCTGTGCCACAGCGGCTTCCAGTGCCTCCACCACCACCACCACCACCATTGCCACCATTCTCAATGAGTACAACTAATAATGTTAAAACATCACCACA ACAGCCGCCGCCGCCGCCACCACCACCACCCCCTCCTACGACACTGTCTTCAAGTTCAAAATCTACTGCTAGTTGTATTGGTGGGGCACCACCTCCTCCG CCTCCTCCTCTGCCTCCTTTTGGTCGCAACCCTGCTAATGCCCCAAGGCCACCTCCTCCTCCTCCTCCTCCTGGTCGCAACCCTACTAATGCCCCAACGC CACCTCCTCCTCCACCTGGACCTACACGCCCCACTTCCACAGCACCGCCTCCGCCACCCAAGCCTCCTGCAGCTCCCCCTCCACCACCTGGTCGTGCCTC AGTACCAGGTCCACCTCCACCTCCTGGAGCAAAGGGCTCTAATGTGCCACCACCTCCACCTCCATCTGCAGGAAGAGGAAAAGCTTCTTTAGGGGCAAGT AGCCACGTAAGAGGTCGAAGTGCTGGTGGGTCTGGTAATGCCCCCAAGAGAGCTTCTCTAAAGCCCCTGCATTGGGTGAAAGTTACTCGAGCAATGCAAG GGAGTTTGTGGGCTGACTCGCAAAAACAGGAAAACCAATCAAGGGCTCCTGAGATTGATATATCAGAACTTGAAAGTTTGTTCTCAGCAGCCTCTGTTTC AGATGGGAAAGGCAGTATTAAAGCTGGAGGTCGACGTGGTTCTCACATTAACAAACCTGAGAAAGTGCAATTGGTAGACTTGCGAAGAGCCTATAATTGT GAAATAATGCTCACAAAAATTAAAATTCCTTTGCCAGACATGATTAAAGCAGTTCTAGCTTTGGATTCCTCAGCTTTAGACATTGACCAGGTTGAGAACC TCATCAAATTTTGTCCTACCAAGGAAGAAATGGAAATGCTGAGGAATTATACAGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGTTTTTCCTGGAGTT GATGAAGGTTCCACGAGTTGAAGCTAAGTTGCGAGTGTTTGCGTTCAGAATTACCTTTTCTAGTCAGGTGGATGACTTAAGACGAAATCTGAATAGTATA AATGATGCTACTAGAGAGGTAAAAGAATCCGCGAAATTGCGTCAGATAATGCAAACAATTCTCACTCTGGGAAATGCTTTGAATCAGGGCACTGCACGAG GATCTGCTGTAGGATTCAAATTGGACAGTCTTCTTAAATTATCAGATACTCGTGCAAGAAACAATAAAATGACATTAATGCACTACTTGTGCAAGCTACT AGCTGAGAAAATGCCGGAGTTACTAGACTTTGATAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAACTGAAAACTCTGGCTGAAGAAATGCAA GCTGTGAGTAAAGGCCTTGAAAAGGTTGAACAAGAACTCACCACTTCAGTAAATGATGGTGCCATCTCCACTGGCTTTCAAAAGGTCTTGAAGAATTTCC TTGACACTGCTGAATCTGAAGTTAGGTCACTTATCTCATTATATTCTGAAGTGGGAAGAAATGCAGATTCCTTGTCTCAGTACTTTGGAGAGGATCCGGC TCGTTGTCCCTTTGAACAAGTGACGCAAATCTTGGTTGTTTTTGTTAAATTGTTCAAAAAGTCACGAGAGGAGAATGAAAGACAGGCTGATGTTGAAAAG AAGAAATTGGAAAAGGAAGCCATGAAAGAAAAGGCAACCACTAATTTATCTGCTAGGAAAGATGGTGTTGATAGCGATAAGTCAACGCTTGGCTTTCAAA TTCAGAAAGACCTCCTTAATCATGGTTCTAATCACACGACAACCTGA
AA sequence Show only first row Show all	>Potri.003G103800.3 pacid=42787518 polypeptide=Potri.003G103800.3.p locus=Potri.003G103800 ID=Potri.003G103800.3.v4.1 annot-version=v4.1 MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTDVLPDGMYQIYLHEIITELYEEFPDSSFLAFNFREGEKRSQLAEILCQYDVTVMDYPRQYEGCPLLPL SLIQHFLRVCESWLSKGNHQNVILFHCERGSWPLLAFLLASFLIFRKLHSGEKRTLEIVHKEAPKGFLQLLSPLNPFPSQLRYLQYVARRNIAPEWPPPE RALSLDCVIFRAIPSFDAGNGCRPIIRIFGRNLHTKGGLSTQMLFSMSKKKKSALRHYCQADCDVIKIDIQCLVQGDVVLECLHLDLDSEREVMMFRVMF NTAFIRSNILMLNSDNLDILWDSKERYPKGFRAEVLFGEVESISSPKAPTTILNGEEKGGLPIEAFSRVQELFSGVEWVDSSDDAALWLLKQLSVISDAR EFSRMQTQVSSYASPVDSEDENNASSTADSSDEAFDYVSKSTAEGMKPLMSNTVESVPLSAESNDPQDLDLTTDPPPQVSVKGVPSSLHQQLSVAGVGTL TSPCPPQPPPPPPFARTPPPPPPHPPSSISNQSPLSVAAPLDPYPPPPPLPPSPPTRPSTTTSNSKSPPPPPPPPPLPNVSSGDLSTASVPTSKRDIPPP PCPPPPPNFFNKDASLPPASHNTCLLPPPPPPPPPPPPLPNFSKDSGTPPPPTCRGPPPPPPPPPPLPNFSKDSGTPPPPTCRGPPPPPPPPPPPPPPPP PPPPPPPSPPPPPPLLSSSKGPPPPPISSKTRQSSVPQRLPVPPPPPPPPLPPFSMSTTNNVKTSPQQPPPPPPPPPPPTTLSSSSKSTASCIGGAPPPP PPPLPPFGRNPANAPRPPPPPPPPGRNPTNAPTPPPPPPGPTRPTSTAPPPPPKPPAAPPPPPGRASVPGPPPPPGAKGSNVPPPPPPSAGRGKASLGAS SHVRGRSAGGSGNAPKRASLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASVSDGKGSIKAGGRRGSHINKPEKVQLVDLRRAYNC EIMLTKIKIPLPDMIKAVLALDSSALDIDQVENLIKFCPTKEEMEMLRNYTGDKEMLGKCEQFFLELMKVPRVEAKLRVFAFRITFSSQVDDLRRNLNSI NDATREVKESAKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKTLAEEMQ AVSKGLEKVEQELTTSVNDGAISTGFQKVLKNFLDTAESEVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKLFKKSREENERQADVEK KKLEKEAMKEKATTNLSARKDGVDSDKSTLGFQIQKDLLNHGSNHTTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	0	1
					Potri.014G023301 [exp]	2.82	0.8513
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	2.82	0.8699
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	3.16	0.8510	NPH4.1
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	5.19	0.8517
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	5.47	0.8602
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121701 [exp]	8.71	0.8189
AT2G25760			Protein kinase family protein ...		Potri.003G049700 [exp]	9.59	0.7950
AT1G72390			unknown protein		Potri.003G069200 [exp]	10.67	0.8450
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	11.40	0.8246
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.009G155400 [exp]	14.07	0.8157

Compare expression of checked genes

Potri.003G103800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.