Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32350 433 / 1e-153 AOX1D alternative oxidase 1D (.1) AT3G22370 422 / 9e-149 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT3G22360 416 / 8e-147 AOX1B alternative oxidase 1B (.1) AT3G27620 409 / 9e-144 AOX1C alternative oxidase 1C (.1) AT5G64210 366 / 2e-126 AOX2 alternative oxidase 2 (.1) AT4G22260 56 / 1e-08 IM1, IM IMMUTANS, Alternative oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001500 [exp] 416 / 4e-146 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 415 / 6e-146 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001600 [exp] 406 / 2e-142 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.011G021800 [exp] 56 / 1e-08 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 54 / 9e-08 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035670 [exp] 397 / 2e-138 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Lus10020523 [exp] 379 / 8e-132 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10005372 [exp] 379 / 2e-131 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10002872 [exp] 55 / 3e-08 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF01786 [poplar] [flax] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Potri.003G103900.1 pacid=42786244 polypeptide=Potri.003G103900.1.p locus=Potri.003G103900 ID=Potri.003G103900.1.v4.1 annot-version=v4.1 ATGAGTCAGAGTACAGCAACGAAGGTTTCCAGGTTGCTTCTGGGGCAACTTGGCCCTCGTTTCTTGTCAAACACAACCACTTTTTCTAGGCCTGCAACTG CAGGCATGAGCTCGACCAGATTTGCTTCTTATGGGGTCCGAGGTTGGAGTGCTTCAGCACCACCTGTTATGCCAGGTGAAGAGGAGAAACCAAAGGCAGC TGCAAATTCATTTACTACAGAAGATGGTAAGGCCATCGTGAGCTATTGGGGTGTGACTCCCCCCAAGATCACCAAGGAGGATGGCACAGCTTGGAAGTGG AACTGCTTCAGGCCATGGGAGTCCTACAAACCTGACATCTCAATTGATGTGAAGAAGCACCATAAGCCTGGTACAACAATGGATAAATTTGCCTACTGGA CCGTCCAGGTCCTCAAATACCCCACTTACTTATTCTTCCAGAGACGGCATATGTGCCATGCCATGCTGCTAGAGACAGTAGCTGCTGTTCCAGGCATGGT TGGAGGGATGCTCTTGCATTGCAAATCACTACGACGATTCGAGCAAAGTGGCGGCTGGATAAAAGCTCTTTTAGAAGAAGCTGAGAACGAGCGGATGCAT CTTATGACCTTCGTTGAAATAGCTAAGCCCCAGTGGTACGAACGAGCCCTTGTATTTGCTGTCCAAGGTGCCTTCTTCAATGCTTATTTTCTGGCATATT TAGCCTCTCCGAAGCTTGCACACCGTATAGTAGGGTACTTGGAAGAGGAGGCGGTGAACTCCTACTCAGAGTTCCTCGAGGACTTGGACAATGGTAATTT TGAGAACGTGCCTGCCCCTGCTATTGCCATTGACTACTGGCGCTTGCCTCCCAACTCCACGCTTCGTGATGTTGTGTTCGTTATAAGAGCTGATGAAGCA CATCACCGAGACCTTAACCACTACGCATCGGACATTCAATGTCAAGGACAAGAGTTAAAGCATACACCTGCTCCAATCGGATATCATTAA
AA sequence Show only first row Show all	>Potri.003G103900.1 pacid=42786244 polypeptide=Potri.003G103900.1.p locus=Potri.003G103900 ID=Potri.003G103900.1.v4.1 annot-version=v4.1 MSQSTATKVSRLLLGQLGPRFLSNTTTFSRPATAGMSSTRFASYGVRGWSASAPPVMPGEEEKPKAAANSFTTEDGKAIVSYWGVTPPKITKEDGTAWKW NCFRPWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVLKYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH LMTFVEIAKPQWYERALVFAVQGAFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEFLEDLDNGNFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEA HHRDLNHYASDIQCQGQELKHTPAPIGYH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	1.00	0.9838
AT1G29290			unknown protein		Potri.004G061300 [exp]	1.41	0.9737
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	2.00	0.9433	Pt-ATTPS11.1
AT1G29290			unknown protein		Potri.011G070500 [exp]	2.23	0.9431
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.001G332900 [exp]	3.46	0.9525
AT1G64160			Disease resistance-responsive ...		Potri.005G100700 [exp]	4.89	0.9342
AT2G31945			unknown protein		Potri.009G024300 [exp]	5.83	0.9173
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Potri.015G030700 [exp]	6.63	0.9246	Pt-MKK9.2
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.009G046200 [exp]	8.24	0.8837
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	8.48	0.9144

Compare expression of checked genes

Potri.003G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.