Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33520 339 / 1e-112 MOS2 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) AT4G25020 158 / 5e-44 D111/G-patch domain-containing protein (.1) AT1G55460 44 / 0.0002 C2H2ZnF DNA/RNA-binding protein Kin17, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129700 [exp] 600 / 0 AT1G33520 345 / 9e-115 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.010G204900 [exp] 45 / 0.0001 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Potri.008G055300 [exp] 42 / 0.001 AT1G55460 546 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004607 [exp] 374 / 5e-126 AT1G33520 396 / 8e-135 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10004541 [exp] 364 / 4e-122 AT1G33520 381 / 9e-129 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF12656 [poplar] [flax] G-patch_2 G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.003G104200.2 pacid=42784884 polypeptide=Potri.003G104200.2.p locus=Potri.003G104200 ID=Potri.003G104200.2.v4.1 annot-version=v4.1 ATGAAGAAGCTATCCTTCTCAATCCCATCAAAATCCAAATCAAAACCTAAACCAGTCTCAGACCAACCAGACAATGACAACTCCAAACAATATCTCACCG AATTCGATCCCTCAAAAAACCTACTCCCTCAAAACACTCAAACCCCAATTATCCTTCCTATTCCAAACGATTACCAACCCCACAAGAAAATGAAAAACAT CCACCTCCCTCTCCACCAAGATGATTCCTCCACCGACCTCCGTTTCGAAGTCGAAACCCTCTCCTCCGATCCCGCCGCAGCCTCCGATTCCATTTCCTTC GGCCTCAATCTCCGCCAGTCCGCCACCACGCAAACCCAAGATGCCAGAAGCGAGGACGTGCTGTTGGAGAAATTGAGGTATGATCTGAAGAGGTTGCCCG AGGATAGAGGGTTTGAGGAGTTTGAAGAAATGCCGGTTGAGGATTTTGCGAAAGCGTTGCTTAAGGGTTATGGTTGGCATGAAGGGAGAGGTGTTGGTAA GAATTCTAAGGAAGATGTTCAAGTCAAGCAGTACACGAAAAGAACTGATAAAGAAGGTCTGGGCTTTCTTGCTGCCTCACATGATTCTAAAAATAGTAAG AGTAGTAGCAGTAATGGTAATGTTAATGGTAGTGGTAGTGTTATTGTTAAAGAGAAACAAAGAGAAAGGAGTAAAGATGGGCTTTTTTTGGGTAAAGAAG TTAGAGTAATTAGTGGTAAAAAGGAAAATTTGGGGTTAAAAGGTACGGTTGTGGAGAGATTGGGTTCGGATTCAATTGCTTTGAGGGTAGAAAAGAGTGG GGAGAGAGTGAAAGTCCGGGTTTCTGATGTTGCGGAATTGGGGTCGAGAGAAGAGGAGAGGTGCTTGAAGGAGTTAAAGAGTATAGAAGAGAAGAAACCG AGTGATGGGGATAGGGAACAACGGCGTGTTAATAAGCGGAATGTAGAGAGTAGAGACAGTTTGAAAATGGGGAATGGTAATGTTGGTAAAGAGAGAGGAG TTCAGTGGCTTAGGAGTCATATTCGGGTTAGGATAATTAGTAAGGACTTGAAAGGGGGGAAATTGTACTTGAAGAAAGGGGAGGTGGTAGATGTGGTTGG GCCTTACAAATGTGATATAAGTATGGATGAGAGTAGAGAGTTGGTGCAAAGTGTGGATCAGGATGCTCTTGAGACTGCATTGCCACGTCGTGGGGGTCCG GTTCTTGTTCTTTATGGAAAGCATAAAGGAGCTTATGGGAATTTGGTTCAAAGGGACATAGATAGAGAGGTTGGTGTTGTGCAGGATTCTGGTAGCCATG AGTTGCTTGATGTCAAACTCGAGCAAATTGCTGAGTATGTTGGAGATCCCGGCTACATTGGTTATTGA
AA sequence Show only first row Show all	>Potri.003G104200.2 pacid=42784884 polypeptide=Potri.003G104200.2.p locus=Potri.003G104200 ID=Potri.003G104200.2.v4.1 annot-version=v4.1 MKKLSFSIPSKSKSKPKPVSDQPDNDNSKQYLTEFDPSKNLLPQNTQTPIILPIPNDYQPHKKMKNIHLPLHQDDSSTDLRFEVETLSSDPAAASDSISF GLNLRQSATTQTQDARSEDVLLEKLRYDLKRLPEDRGFEEFEEMPVEDFAKALLKGYGWHEGRGVGKNSKEDVQVKQYTKRTDKEGLGFLAASHDSKNSK SSSSNGNVNGSGSVIVKEKQRERSKDGLFLGKEVRVISGKKENLGLKGTVVERLGSDSIALRVEKSGERVKVRVSDVAELGSREEERCLKELKSIEEKKP SDGDREQRRVNKRNVESRDSLKMGNGNVGKERGVQWLRSHIRVRIISKDLKGGKLYLKKGEVVDVVGPYKCDISMDESRELVQSVDQDALETALPRRGGP VLVLYGKHKGAYGNLVQRDIDREVGVVQDSGSHELLDVKLEQIAEYVGDPGYIGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	0	1
AT3G51650			unknown protein		Potri.016G133700 [exp]	1.00	0.9125
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	2.00	0.9115
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.018G075500 [exp]	2.44	0.8833
AT3G02760			Class II aaRS and biotin synth...		Potri.019G071400 [exp]	3.74	0.8620
AT5G38720			unknown protein		Potri.017G108700 [exp]	4.00	0.8597
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Potri.001G135900 [exp]	4.24	0.8578
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	6.00	0.8772
AT3G58110			unknown protein		Potri.013G119700 [exp]	6.92	0.8667
AT5G38720			unknown protein		Potri.004G106900 [exp]	8.77	0.8364
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	8.94	0.8119

Compare expression of checked genes

Potri.003G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.