Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31360 986 / 0 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT1G10930 398 / 3e-124 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 383 / 9e-119 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT4G35740 328 / 8e-102 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT3G05740 323 / 2e-101 RECQI1 RECQ helicase l1 (.1) AT1G27880 196 / 1e-52 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 165 / 2e-42 RECQSIM RECQ helicase SIM (.1) AT1G55150 73 / 3e-13 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 67 / 3e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 66 / 9e-11 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015800 [exp] 390 / 6e-121 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G019800 [exp] 335 / 1e-105 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.005G107400 [exp] 319 / 3e-98 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 294 / 2e-87 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 196 / 9e-53 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 158 / 4e-40 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.003G038300 [exp] 71 / 2e-12 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 67 / 3e-11 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G000100 [exp] 66 / 9e-11 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033289 [exp] 941 / 0 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 835 / 0 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10015467 [exp] 399 / 4e-123 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10042451 [exp] 334 / 3e-105 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 330 / 2e-103 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10041840 [exp] 291 / 5e-87 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 271 / 4e-79 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 236 / 7e-68 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10004503 [exp] 152 / 3e-38 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10036983 [exp] 137 / 2e-33 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G104300.2 pacid=42785893 polypeptide=Potri.003G104300.2.p locus=Potri.003G104300 ID=Potri.003G104300.2.v4.1 annot-version=v4.1 ATGGAAACTGAAGCGGATGTATTAGAAGAGCTACTCAATATAGAGACAGAGATTGAAGATGTTCAAGACCAGATAAAGTTATTACTAGAAAGACAAGAGA AGTTGCACGAGAGACAATCTGAATTGAAGTTTTTGTTGGAAGCATATAAAGCATCTGGAACTGGGAATTCTGCAAATGAAAATGCTTCTCGATCTTCTTC TTTGGAAGACTGGTCAGGTTCATTTGAGTGGGATTCTCAAGCTGATGATGTTAGGCTTAATATTTTTGGCATACCCTCTTATCGTCAAAATCAAAAGGAG ATCATAAATGCTATCATGAGCGGAAGAGATGTTCTAGTGATTATGGCTGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTGCCAGCTATTCTTCGTGATG GTGTGGCCCTCGTTATTAGTCCTTTACTCTCTTTGATCCAAGATCAGGTTATGGGTTTGACTGCTTTAGGCATTCCGGCTTTCATGTTGACATCGACCAC TAGCAAGGAAAATGAGAAGTTCATATACAAGGCCCTTGAAAAGGGTGAGGGTGAGCTTAAGATCTTGTATGTCACACCAGAAAAGATATCAAAGAGCAAA AGATTCATGTCAAAACTTGAAAAATGCCATAATGCGGGGCGTCTCTCACTAATTTCAATTGATGAGGCGCATTGCTGCAGTCAGTGGGGTCATGACTTTC GCCCCGACTACAAGAGCCTCAGTATCCTCAAGACTCAGTTTTCCAATGTTCCCGTGGTGGCTTTGACTGCAACTGCCACACAGAAAGTTCAGTATGATGT AATGGAGATGCTGCGCATTCCAAAATGTGTTAAATTTGTCAGTACGGTCAATAGGCCAAACCTTTTCTACACGGTACGGAGCAAGTCATCTGTTGGTAAG GTGGTTGTTGATGAAATTGCTGAATTCATTCAAGAATCTTATTCAAACAGTGAATCTGGGATAGTGTACTGCTTCTCGAGAAAAGAATGTGAACAGGTTG CGGCAGAGTTACGTGAGAGAGGAATTGCAGCTGATTATTACCATGCAGATATGGATGTAAACGCTCGTGAGAAAGTTCATACGTGGTGGAGCAAAAACAA GCTGCAAGTCATTGTTGGTACAGTGGCATTTGGAATGGGAATCAACAAACCAGATGTTAGGTTTGTCATCCATCACAGCCTGAGTAAATCAATGGAAACA TATTACCAGGAAAGTGGTCGAGCTGGACGAGATGGGCTGCCTTCTGAATGTGTACTCTTTTATAGGCCTGCTGATGTTCCCAGGCAGAGTTCGATGGTTT TCTATGAGAATTCTGGATTGCAGAATTTATATGACATAGTAAGATACTGTCAGTCTAAAAGACAATGTCGTCGAAATGCCTTTTTCCGACATTTTGCTGA GCCATTACAAGACTGCAATGGGATGTGTGATAATTGTGCTTTTCTTAGTGAAGTTATGGAAGTTGATGTATCTCGTCATGCGAAAGTTATGGTTTCATTG CTGCAAGATACGCAAGAGAAAGATCAGAGGCTGACAATGTTGCAATTAGTGGACAAAATGAAAAATAAGAAGGAACTAGGTTCTGACATAAAGAAGGAGG AAATGGAACAGCTTGTCATACAGCTTATACTTGACTTTGTTTTTAAAGAAGAATATCAACATACAGCCTATGCTACAAATGCTTATGTGACAATAGGTCC ATTGGCAAATCAGGTGCTGCAAGGCAAGAAGATAGTTAAGCTTGAGATCTCTAGCAAACAGAAGAATAAGGGTGACAGCATGAAATCAGCAAAGCACAGC CTTGCATTTTCAGGTTTGGAGTTGAAACTTGATGAGTTGCGGGAGAAACTCTCTTCTGGTCATGGTGGAATATTCCCCCATTCTGTCTTGTCTAGCCAGC AGATGAGCATGATAAGTTCCCAGAAACCAAGTTCAGCACAAGAGTTGGAGAAGATAATTGGAAAGCTGAAGACAGAAAAGTATGGGAGTAAAATTCTAGA TGAGATCAAAAAGTACACCAGCTCTGAGCTGCCGGATAATGGCATGTTGAATGAGGAAGAAGGAAGCAGGAATAGAGCTAGCAAGAGGTTAAAGACGAAA AAGGGTATTGTTGTTATCGAGAGCAGTGATGAGGAATTGTAA
AA sequence Show only first row Show all	>Potri.003G104300.2 pacid=42785893 polypeptide=Potri.003G104300.2.p locus=Potri.003G104300 ID=Potri.003G104300.2.v4.1 annot-version=v4.1 METEADVLEELLNIETEIEDVQDQIKLLLERQEKLHERQSELKFLLEAYKASGTGNSANENASRSSSLEDWSGSFEWDSQADDVRLNIFGIPSYRQNQKE IINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVISPLLSLIQDQVMGLTALGIPAFMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSK RFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFSNVPVVALTATATQKVQYDVMEMLRIPKCVKFVSTVNRPNLFYTVRSKSSVGK VVVDEIAEFIQESYSNSESGIVYCFSRKECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMET YYQESGRAGRDGLPSECVLFYRPADVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRNAFFRHFAEPLQDCNGMCDNCAFLSEVMEVDVSRHAKVMVSL LQDTQEKDQRLTMLQLVDKMKNKKELGSDIKKEEMEQLVIQLILDFVFKEEYQHTAYATNAYVTIGPLANQVLQGKKIVKLEISSKQKNKGDSMKSAKHS LAFSGLELKLDELREKLSSGHGGIFPHSVLSSQQMSMISSQKPSSAQELEKIIGKLKTEKYGSKILDEIKKYTSSELPDNGMLNEEEGSRNRASKRLKTK KGIVVIESSDEEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	0	1
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	1.41	0.8441
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	3.00	0.8377
AT5G53930			unknown protein		Potri.001G397001 [exp]	3.87	0.7771
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079450 [exp]	4.47	0.8221
AT2G32970			unknown protein		Potri.002G224900 [exp]	6.24	0.7800
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	6.48	0.8006
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	7.34	0.8061
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	7.41	0.7833
AT4G02030			Vps51/Vps67 family (components...		Potri.014G120900 [exp]	10.00	0.7235
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	11.83	0.7796

Compare expression of checked genes

Potri.003G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.