Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38250 118 / 3e-31 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 107 / 9e-27 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 66 / 2e-12 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G25990 66 / 5e-12 Trihelix Homeodomain-like superfamily protein (.1) AT1G76890 62 / 2e-10 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 55 / 2e-08 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 52 / 2e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G63420 52 / 4e-07 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT5G28300 50 / 1e-06 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G03680 45 / 4e-05 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129900 [exp] 333 / 9e-115 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.016G117300 [exp] 147 / 2e-42 AT5G01380 179 / 2e-54 Homeodomain-like superfamily protein (.1) Potri.006G101400 [exp] 140 / 7e-40 AT5G01380 179 / 8e-55 Homeodomain-like superfamily protein (.1) Potri.010G055000 [exp] 71 / 1e-13 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.008G179700 [exp] 65 / 9e-12 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.002G068400 [exp] 59 / 2e-09 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 59 / 2e-09 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 57 / 9e-09 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.005G192000 [exp] 55 / 3e-08 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004806 [exp] 142 / 6e-40 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10002481 [exp] 72 / 4e-16 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10018887 [exp] 59 / 2e-09 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10015824 [exp] 58 / 2e-09 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10033504 [exp] 58 / 3e-09 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10036978 [exp] 57 / 5e-09 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10039080 [exp] 57 / 7e-09 AT5G47660 176 / 3e-50 Homeodomain-like superfamily protein (.1) Lus10028584 [exp] 57 / 7e-09 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 55 / 5e-08 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10038779 [exp] 54 / 8e-08 AT5G47660 171 / 5e-49 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G104500.1 pacid=42785238 polypeptide=Potri.003G104500.1.p locus=Potri.003G104500 ID=Potri.003G104500.1.v4.1 annot-version=v4.1 ATGATGTTTCGCAGTGGAGGAGGAGAAGGAGATGCTGGGCTAGGGTGGATAAACATGATGCCAACAGCGGCGATGCTAAGTCCAACGGCGGAGATCTCTC CTAGGGGTCCGGCGCCACCGCAACATCCGCAGTGGGGACTGCAAGAAACGAAGGAGTTTATTGGTATTAGAGCGGGGTTGGAGAAGGATTTTGCAGTGAC AAAGAGGAACGAGACGTTATGGGAAATAGTGAGTGCTAAAATGAGGGAGAAAGGGTACTACCGAAGGACACCTGAACAGTGCAAGTGCAAGTGGAAAAAC CTCGTCAGTCTTTACAAGGGAAAGGAGGCATCTGATCCTGAGACTGGCCGGCAATGCCCGTTCTTTGAGGAACTGCATGAGGTGTTCACTGAAAGAGCTA AGAACATGCAGCGACTACTTCTTGAATCCGAGGCAGGTTCCACCCAGTCAAGGAAGAAAGTGAAAAGAATCAATGGAGATCGATCCTCTGATGAATTATC AGAAGATGAGGATGAGGATGAAAGTGAGGAGGAGAAGCCAGCTAGAAACAATTCTAGGAAAAGGAAGGGTGAAAAAAATGTCGCGGAGAAGTCTCCAAGA CCAAGCAGTAGTTCTTTTGGTGGTGTTCAAGAAATGCTCAAGGAGTTCTTCCAACAGCAACAGAAGATGGAGATGCAGTGGAGGGAGTTGATGGAAAAGC GTGCTCATGAGCGGCAGATGTTTGAGCAGGAATGGCGACGGTCAATGGATAAGCTCGAGAGGGAGAGATTAATGATCGAGCAGGCCTGGAGGGAGAGAGA AGAACAGAGGAGGATAAGAGAAGAGAGCAGGGCCGAGCGAAGAGATGCCCTGCTGACAGCCCTTTTGAACAAACTCATCAGTGAAAATACCATGAAAGAC TGA
AA sequence Show only first row Show all	>Potri.003G104500.1 pacid=42785238 polypeptide=Potri.003G104500.1.p locus=Potri.003G104500 ID=Potri.003G104500.1.v4.1 annot-version=v4.1 MMFRSGGGEGDAGLGWINMMPTAAMLSPTAEISPRGPAPPQHPQWGLQETKEFIGIRAGLEKDFAVTKRNETLWEIVSAKMREKGYYRRTPEQCKCKWKN LVSLYKGKEASDPETGRQCPFFEELHEVFTERAKNMQRLLLESEAGSTQSRKKVKRINGDRSSDELSEDEDEDESEEEKPARNNSRKRKGEKNVAEKSPR PSSSSFGGVQEMLKEFFQQQQKMEMQWRELMEKRAHERQMFEQEWRRSMDKLERERLMIEQAWREREEQRRIREESRAERRDALLTALLNKLISENTMKD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.003G104500 [exp]	0	1
AT2G22590			UDP-Glycosyltransferase superf...		Potri.002G162300 [exp]	1.00	0.8550
AT5G37490			ARM repeat superfamily protein...		Potri.004G083900 [exp]	5.19	0.7840
AT3G57450			unknown protein		Potri.016G055901 [exp]	9.48	0.8041
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G030125 [exp]	11.48	0.8156
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.010G217700 [exp]	13.49	0.6925	LBD11.1
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G008300 [exp]	16.73	0.7990
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.014G071200 [exp]	19.44	0.7925
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G143900 [exp]	21.35	0.7276
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.006G186600 [exp]	21.63	0.7639
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G125900 [exp]	28.46	0.7821

Compare expression of checked genes

Potri.003G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.