Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 455 / 2e-156 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64950 448 / 1e-153 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64930 444 / 5e-152 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT2G12190 442 / 4e-151 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64900 416 / 3e-141 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT3G03470 414 / 3e-140 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT5G61320 412 / 6e-140 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT5G04660 311 / 3e-100 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT5G04630 310 / 7e-100 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 303 / 3e-97 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087950 [exp] 506 / 3e-176 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.013G076600 [exp] 503 / 3e-175 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088086 [exp] 500 / 3e-174 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.013G076700 [exp] 498 / 3e-173 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 498 / 4e-173 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 497 / 7e-173 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088154 [exp] 494 / 1e-171 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.001G330501 [exp] 467 / 6e-161 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 447 / 3e-153 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013067 [exp] 587 / 0 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 453 / 1e-155 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 452 / 1e-154 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 450 / 2e-154 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 446 / 1e-152 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 444 / 5e-152 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 425 / 2e-144 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 322 / 3e-104 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10007660 [exp] 314 / 2e-101 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018351 [exp] 306 / 8e-98 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G104600.1 pacid=42787286 polypeptide=Potri.003G104600.1.p locus=Potri.003G104600 ID=Potri.003G104600.1.v4.1 annot-version=v4.1 ATGGAGTTCTGGTTGTTACTGATTGCATTTCTTTGCCTGTTCGTTTTTCTTCTGTCATTTCTTGATCTCTCCCATAAAAACAAAAAGTTGCCACCAGGGC CCCCTACCTTACCCGTCCTAGGAAACTTTTTATGGCTTCTGAGATCCTCCAATAATTTTTCTTCCTTGGAGCCTGTTCTCCGCCAACTACGTGCCCAGTA TGGCCCTATTGTGACTCTACACCTGGGATCCGAGCCTTCCATCTTCATAACCACTGCTGAAGCTGCCCATAAGGCACTTGTACGTAGTGGCTCGATATTT GCTAGTCGCCCACCAGCTCTTGAGACCACCCGTATCATGTTAAGCAACGAAACTACTGTGACTACTGCACCTTATGGACCGCTATGGCTCCAACTCCGTC AAAATTTCATGTCTGCGTTTCATCCTTCACGCTTACATTTGTATTCCGATGGCCGAAAATGGGCAATGAACATACTTAGGAGCAAACTCTTGGAAGAAGC GAGACCGAACCACGAAGCAATTGTTGTTGTTGATCATTTTCAACATGCTGTGTTTTGCTTGCTAATTTACCTGTGCTTTGGTGAGAAATATGAAGAGAGT GTTATTAGACAGATTACTTCAGTGCAACGTGCTATCATAAAAAATTTCGTGAAGTTTAATTTGCTTAATTTCATGCCTAAGCTGGGAAAAATTCTGTTTC ACAAGTTGTGGAAGGAACTTCTGGAGACTCGCCGAGAACTGGAAAATGTCCTCCTGCCTCTTATCGATGCACAACGAGAGAAAAAACACCAGAAATTAAT GGATGAAGGAGGGGGAGAGAGCATTCTGTCCTATGTTGATACCTTGATAGATTTTCAGTTACCAGATAGTGGCAGAAAGTATTCGGATGAAGAATTGGTG AGTTTGTGTTCAGAGTTTTTTCATGGTGGGACGGACACTTCAATAACGACATTACAATGGGCTATGGCTAATATAGTGAAGCACCAACACATACAAGAAA CGTTGCATAAAGAAATCAACGCTGCAGTAAAACCAGGAGAAGAGATAACAGAGGAGGATTTGAAGAGAATGCCTTATTTGAAGGCTGTAATTCTGGAAAC TCTTCGACGACACCCCCCAGGACACTTTATACTACCCCATGGGGTCACGGAGGATACGAAATTAGAAGGCTACGATGTACCCAAAAATTCGATAATTAAT TTCACGGTAGCAGACATGGGATGGGATGCAGATGTGTGGGAGGATCCAATGGAATTTAGACCAGAGAGATTCTTAAAAAATGGAAATGGTCAAGAGGTAG TGTTTGACATGAAAGGTATAAAAGAGATCAAGATGATGCCCTTTGGCGCTGGTAGGAGAGCATGCCCTGCTATTGCCATGGCATTACTTCACCAAGAATA CTTTGTGGCAAATTTGGTTAGAGACTTTACATGGACTGCTGAAAATGGTTGTGCCATTGATTTGTCAGAGAAACAGGATTTCACCATGGTCATGAAGAAT CCACTTCGCGTGCATATTTCTCCAAGAACATGTTGA
AA sequence Show only first row Show all	>Potri.003G104600.1 pacid=42787286 polypeptide=Potri.003G104600.1.p locus=Potri.003G104600 ID=Potri.003G104600.1.v4.1 annot-version=v4.1 MEFWLLLIAFLCLFVFLLSFLDLSHKNKKLPPGPPTLPVLGNFLWLLRSSNNFSSLEPVLRQLRAQYGPIVTLHLGSEPSIFITTAEAAHKALVRSGSIF ASRPPALETTRIMLSNETTVTTAPYGPLWLQLRQNFMSAFHPSRLHLYSDGRKWAMNILRSKLLEEARPNHEAIVVVDHFQHAVFCLLIYLCFGEKYEES VIRQITSVQRAIIKNFVKFNLLNFMPKLGKILFHKLWKELLETRRELENVLLPLIDAQREKKHQKLMDEGGGESILSYVDTLIDFQLPDSGRKYSDEELV SLCSEFFHGGTDTSITTLQWAMANIVKHQHIQETLHKEINAAVKPGEEITEEDLKRMPYLKAVILETLRRHPPGHFILPHGVTEDTKLEGYDVPKNSIIN FTVADMGWDADVWEDPMEFRPERFLKNGNGQEVVFDMKGIKEIKMMPFGAGRRACPAIAMALLHQEYFVANLVRDFTWTAENGCAIDLSEKQDFTMVMKN PLRVHISPRTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.003G104600 [exp]	0	1
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.005G107200 [exp]	3.46	0.7036
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	5.65	0.6835
					Potri.006G226200 [exp]	14.83	0.6733
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Potri.002G228700 [exp]	23.23	0.6166
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	24.45	0.6496
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	27.83	0.6490	Pt-PNFT3.4
AT4G17690			Peroxidase superfamily protein...		Potri.012G076500 [exp]	33.76	0.5881
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G218101 [exp]	39.00	0.6301
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	40.69	0.6068
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.003G103550 [exp]	43.35	0.5497

Compare expression of checked genes

Potri.003G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.