Plant FIBer expression Database

Potri.003G104700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41880 651 / 0 POLA4, POLA3 DNA primases;DNA primases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009444
[exp]
723 / 0 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Lus10006088
[exp]
323 / 3e-108 AT5G41880 284 / 2e-93 DNA primases;DNA primases (.1)
Lus10000294
[exp]
204 / 9e-62 AT5G41880 173 / 4e-50 DNA primases;DNA primases (.1)
Lus10006089
[exp]
202 / 7e-59 AT1G35530 251 / 2e-72 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0243 AEP PF01896 DNA_primase_S DNA primase small subunit
Representative CDS sequence
>Potri.003G104700.1 pacid=42784736 polypeptide=Potri.003G104700.1.p locus=Potri.003G104700 ID=Potri.003G104700.1.v4.1 annot-version=v4.1
ATGGATAGAGAAGAAAGCGAGAATGGAAGGGAAGACATGTTGATTGATGGACAGAAGCAGGGAAATGTTTCTGTCCCTAGCGAATTTAATGTTAATTACC
TCAAACTTTATTATGCAAAGCTCTTTCCTTATGCTGATATGTTCAAATGGATGTCCTACGGAAATGATGGGAAGCATCCGGCTTGTGACCAGTCTTACTT
CAGCCGGAGAGAGTTTTCTTTTACACTTGAAAATGATATCTACCTTCGGTATCAGTCTTTCAACAATGTAGTTCAACTTGAAAATTCAATCAAAGAGAAG
TGCCCCTTTAAAATCGATATCGGTCCTGTTTACAGTGTAGATCCTGCTAAGAAGAATGCATATGCCCAAAGTGGTGATAATGTTTTTACTCCAGTGGAGA
GAGAGCTAATATTTGACATTGATATAACAGACTATGATGATGTTAGATATTGCTGCTCTGGAGCTGATGTTTGCCTGGAATGCTGGCCTTTAATGACAGT
TGCTATTAAAGTGATTGATACTGCACTTAGAGATGACTTTGGCTTTAACCACATTCTATGGGTTTATAGTGGCCGGCGTGGTGTCCATTGCTGGGTCTGT
GATGGGAAAGCAAGAAGGTTGACAAATGAACAGAGGGCAGCTGTTGCTGATTATTTTCGAGTATACAAGGGAAATGAAAATAGCAGCAAAAAGGTTTCAT
TGACTGGTCCTGCCCTTCATCCTTTTCTCGTGAGGTCGTATTCTGAAGTTCTTGAGCGTTTTTTTGAGACAAAATTGCTTCTCTCTCAGAATATATTTTC
AACCGAGGATAGATACGAGAAGATTCTGGAGATGATTCCAGACAAATCTGCTACTTCTGAGCTACGGGGAAAGTGGCAGACTAAGAAAGGCTCAAAAGAA
GACATTAATGTTGTTCGATGGGAGCAGCTAAAGAACACACTGCAATCTGGAAAATACAAGGCACAAGGGCTGCGTAGGTGTGTTGAAGAGATTGTGTTTT
CCTTTACCTATCCGAGACTTGATATGGAGGTCTCAAGACACATGAACCATTTGCTGAAGGCACCTTTCTGCGTACATCCAAAAACAGGACGTGTTTGTGT
GCCTATTGATCCTAACCACTGTGATGAATTTGATCCAACTACGGTGCCAACTCTTTCCCAGCTATTTGAAGAACTTAACATAGGAGGAACGAGAGCAGAA
GATGAAAATGAATGGGATAGAACCTCACTTGGACAGTCCATCAGTTTTTTCAGATCATCATTTCTGCAACCTCTTCTAAAATCCTGCAAGGAGGAGATGG
AGAGCTCCTACAAAGCAAAACTGCAGCAATCAAAAAGTCCCCTGAGCTGGTAG
AA sequence
>Potri.003G104700.1 pacid=42784736 polypeptide=Potri.003G104700.1.p locus=Potri.003G104700 ID=Potri.003G104700.1.v4.1 annot-version=v4.1
MDREESENGREDMLIDGQKQGNVSVPSEFNVNYLKLYYAKLFPYADMFKWMSYGNDGKHPACDQSYFSRREFSFTLENDIYLRYQSFNNVVQLENSIKEK
CPFKIDIGPVYSVDPAKKNAYAQSGDNVFTPVERELIFDIDITDYDDVRYCCSGADVCLECWPLMTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVC
DGKARRLTNEQRAAVADYFRVYKGNENSSKKVSLTGPALHPFLVRSYSEVLERFFETKLLLSQNIFSTEDRYEKILEMIPDKSATSELRGKWQTKKGSKE
DINVVRWEQLKNTLQSGKYKAQGLRRCVEEIVFSFTYPRLDMEVSRHMNHLLKAPFCVHPKTGRVCVPIDPNHCDEFDPTTVPTLSQLFEELNIGGTRAE
DENEWDRTSLGQSISFFRSSFLQPLLKSCKEEMESSYKAKLQQSKSPLSW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41880 POLA4, POLA3 DNA primases;DNA primases (.1) Potri.003G104700
[exp]
0 1
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Potri.004G131600
[exp]
3.00 0.9395
AT5G44635 MCM6 MINICHROMOSOME MAINTENANCE 6, ... Potri.001G074000
[exp]
3.74 0.9381
AT1G54385 ARM repeat superfamily protein... Potri.013G058700
[exp]
5.00 0.9254
AT1G44900 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, ... Potri.001G070500
[exp]
5.47 0.9374
AT2G16440 MCM4 MINICHROMOSOME MAINTENANCE 4, ... Potri.009G121500
[exp]
8.71 0.9263
AT1G70280 NHL domain-containing protein ... Potri.010G094200
[exp]
9.79 0.9005
AT5G19330 ARIA ARM repeat protein interacting... Potri.005G210000
[exp]
10.81 0.9127
AT3G02920 ATRPA32B Replication protein A, subunit... Potri.006G167600
[exp]
10.81 0.9041
AT5G20850 ATRAD51 RAS associated with diabetes p... Potri.006G135200
[exp]
11.22 0.9145
AT1G54385 ARM repeat superfamily protein... Potri.019G033900
[exp]
11.48 0.9199

Potri.003G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.