Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EIF2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04170 848 / 0 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1) AT4G18330 764 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G18720 726 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1) AT4G20360 79 / 2e-15 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 77 / 5e-15 GTP binding Elongation factor Tu family protein (.1) AT1G18070 51 / 1e-06 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 46 / 4e-05 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G08650 42 / 0.001 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129100 [exp] 928 / 0 AT1G04170 866 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Potri.002G215900 [exp] 84 / 5e-17 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 80 / 6e-16 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.003G121600 [exp] 76 / 2e-14 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.001G110200 [exp] 75 / 3e-14 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.019G062500 [exp] 49 / 5e-06 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.013G093400 [exp] 48 / 1e-05 AT1G18070 797 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.006G275500 [exp] 44 / 0.0002 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.007G065600 [exp] 42 / 0.0007 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024802 [exp] 867 / 0 AT1G04170 853 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10018734 [exp] 865 / 0 AT1G04170 852 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10020312 [exp] 860 / 0 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10005680 [exp] 857 / 0 AT1G04170 846 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10008161 [exp] 84 / 6e-17 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10027995 [exp] 81 / 3e-16 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10043342 [exp] 71 / 9e-13 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 62 / 3e-10 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 61 / 8e-10 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 61 / 1e-09 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [poplar] [flax] PF09173 [poplar] [flax] eIF2_C Initiation factor eIF2 gamma, C terminal
Representative CDS sequence Show only first row Show all	>Potri.003G104900.1 pacid=42785751 polypeptide=Potri.003G104900.1.p locus=Potri.003G104900 ID=Potri.003G104900.1.v4.1 annot-version=v4.1 ATGGCGCGGAAAGGCTTGATGGAACAAGACTTGAGTAAATTGGATGTGACGAAGTTGCATCCACTCTCTCCTGAAGTTATATCGCGTCAGGCCACTATTA ATATAGGTACTATTGGTCATGTGGCGCATGGGAAGTCTACTGTTGTGAAAGCAATTTCTGGTGTTCAGACAGTTCGTTTTAAAAATGAGTTGGAGCGTAA TATTACAATAAAGCTCGGATATGCAAACGCGAAGATATACAAGTGCGAAGATGAGCGGTGTCCTCGGCCAAAGTGCTACAAGGCATATGGAAGTGGAAAG GAAGATAATCCTGTGTGTGATGTAGATCCCAAACACTGCAGGATGAATTTGCTGAGACATGTCTCTTTTGTTGATTGCCCGGGTCATGACATTCTCATGG CTACTATGCTTAATGGAGCAGCAATTATGGATGGAGCTTTACTTCTCATTGCTGCGAATGAGAGCTGTCCCCAACCACAGACTTCTGAACACCTTGCTGC TGTTGAAATCATGCGTCTCCAACATATTATAATTCTTCAAAATAAAGTGGATCTTATTCAGGAAAATGCGGCCATAAACCAGCATGAAGCTATTCAGAAA TTTATTCAGGGAACTGTTGCTGATGGTGCACCAGTAGTGCCAATTTCTGCTCAGCTAAAGTATAACATAGATGTTGTGTGTGAGTACATCATAAAAAAGA TCCCGATTCCAGAGAGGAACTTTACCTCACCACCTAACATGATTGTGATTCGATCTTTTGATGTAAACAAGCCTGGATATGAGGTTGATGAGATAAGAGG GGGCGTGGCTGGAGGAAGCATCTTCAGGGGTGTCTTGAAGGTCAATCAATTTATTGAGATCCGTCCCGGGATCATTGTTAAAGATGATGCTGGGAACATG AAATGCACCCCAATATATACTAGAATAGTATCATTGTATGCTGAGCAGAATGAGCTACAATTTGCTGTGCCCGGAGGTCTCATTGGTGTTGGCACAACCA TGGACCCCACTCTGACACGTGCAGATAGGTTGGTGGGTCAGGTTCTTGGTGATGTTGGATCTCTTCCTGAAATTTTTGGTGAACTTGAGGTGAATTTCTT CCTTTTGAGACGGCTTATTGGTGTCAGGACAAAGGGTTCGGAGAAGCAGGGAAAGGTATCAAAACTGACGAAGGGAGAGATTCTTATGCTGAACATCGGG TCAATGTCATCTGGGGCTCGAGTTATTGCTGTGAAGAATGATTTGGCAAAGCTACAACTGACTTCCCCAGTCTGCACCAGCAAGGGTGAGAAGATTGCAT TGAGCCGCCGAGTGGAGAAGCACTGGCGGCTCATTGGGTGGGGTATGATTCAAGCTGGAACCACCATTGAAGTTCCACCCTGCCCTCTCTGA
AA sequence Show only first row Show all	>Potri.003G104900.1 pacid=42785751 polypeptide=Potri.003G104900.1.p locus=Potri.003G104900 ID=Potri.003G104900.1.v4.1 annot-version=v4.1 MARKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPKCYKAYGSGK EDNPVCDVDPKHCRMNLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENAAINQHEAIQK FIQGTVADGAPVVPISAQLKYNIDVVCEYIIKKIPIPERNFTSPPNMIVIRSFDVNKPGYEVDEIRGGVAGGSIFRGVLKVNQFIEIRPGIIVKDDAGNM KCTPIYTRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGDVGSLPEIFGELEVNFFLLRRLIGVRTKGSEKQGKVSKLTKGEILMLNIG SMSSGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGMIQAGTTIEVPPCPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.003G104900 [exp]	0	1	EIF2.4
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.015G023000 [exp]	3.16	0.8898
AT3G02560			Ribosomal protein S7e family p...		Potri.006G087900 [exp]	10.24	0.8959
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Potri.001G341300 [exp]	10.95	0.8522
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.018G079600 [exp]	11.09	0.8518
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	13.85	0.8869
AT2G43780			unknown protein		Potri.019G096500 [exp]	15.55	0.8699
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	16.37	0.8919
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	21.49	0.8562
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G098800 [exp]	23.81	0.8342
AT5G25800			Polynucleotidyl transferase, r...		Potri.005G186600 [exp]	25.39	0.8018

Compare expression of checked genes

Potri.003G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.