Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31420 893 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 859 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 570 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 315 / 2e-99 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 308 / 5e-97 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 306 / 6e-96 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT1G78530 297 / 9e-96 Protein kinase superfamily protein (.1) AT5G07280 315 / 7e-95 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G10290 303 / 8e-95 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26330 310 / 2e-94 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129000 [exp] 1092 / 0 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 585 / 0 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083300 [exp] 335 / 8e-107 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 331 / 2e-105 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 311 / 3e-98 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.007G094500 [exp] 310 / 1e-97 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G074000 [exp] 318 / 1e-96 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G220100 [exp] 313 / 3e-95 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G108000 [exp] 304 / 4e-95 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034753 [exp] 949 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 791 / 0 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033104 [exp] 572 / 0 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 570 / 0 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034739 [exp] 418 / 2e-143 AT1G31420 406 / 3e-139 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10000629 [exp] 306 / 5e-96 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10009790 [exp] 313 / 2e-95 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020962 [exp] 300 / 2e-93 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10015484 [exp] 297 / 4e-92 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 296 / 1e-91 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G105000.6 pacid=42786790 polypeptide=Potri.003G105000.6.p locus=Potri.003G105000 ID=Potri.003G105000.6.v4.1 annot-version=v4.1 ATGTCCATCTGTCCAATGAGATTTCAAAGGCCTTGGCTTCTTTACATTCTACACCTTTATATTCTTGTAAACAAAAGCGGAGCTATCACTCCTGATGGTG AAGCACTATTGAGCTTCAGGAGTGCAATTGTCAGCTCAGATGGTATTCTTCCTTTGTGGAGGCCAGAGGATACTGACCCATGTAATTGGAGAGGCGTGAC ATGTGATCAGAAAACCAAGAGAGTAATATATTTGAATCTGAAGAACCACAAATTAAGTGGACCTATATCACCTGACCTTGGGAAGTTAGAGCACTTGAGA GTTCTAGCTCTATACAACAACAACTTCTATGGAACAATTCCTTCAGAGTTGGGAAATTGCACAGAGTTGCAGGGAATATTCTTGCAGGGCAACTACTTAA GTGGACCAATTCCAAGCGAATTGGGAAACCTAACTGTGCTTCAAAATCTAGATATCTCAAGTAACTCTCTCAGTGGGTCAATCCCTTCATCGCTTGGGAA GTTAAATAAACTCATCACTTTCAATGTGTCAAACAATTTTCTCATCGGACCAATACCATCTGATGGTGTGCTCATCAACTTTGCAGATAACTCGTTCACC GGAAATCGTGATTTGTGTGGAAAACAGATCAATAGAACTTGCAGAGATGATAGTGGCGGGTCTGGAACTGATGGGCAGCCTCCTTCAGGCCAAAATCAAG GAGGAAAGAAAAAATACTCTGGCAGACTTCTTATCAGCACTTCAGCAACCATTGGTGCACTACTTCTAGTGGCACTTATGTGTTTTTGGGGTTGCTTTCT ATATAAGAAATTTGGTAAAAATGAGAGTAATAGTATTGCAATGGATGTTAGTGGAGGTGCATCAATTGTAATGTTTCATGGGGACTTGCCATACTCTTCA AAAGACATCATAAAAAAATTAGAGACTTTGACTGAGGAACATGTCATAGGCTCTGGTGGTTTTGGAACTGTGTACAAGCTTGAAATGGATGATGGCAGTA TATTTGCCTTGAAGAGAATTGTAAAGATGTATGATGGTTTTGATCGATTCTTTGAGAGGGAGCTTGAAATTCTTGGAAGCATAAAACACCGCTACCTGGT TAATTTACGTGGTTATTGCAATTCCCCTACATCAAAATTGTTGATTTATGATTTCCTATCTGGTGGTAGCCTTGATGAAGCACTCCATGAAAGATCTGAG CAACTGGATTGGGATGCGCGCCTGACTATTATTATGGGGGCAGCAAAAGGACTGGCTTACTTGCATCACGATTGTTCCCCTAGGATCATCCATCGTGACA TAAAGTCAAGCAACATTTTGCTTGATGGCAACTTGGAGGCTCGAGTTACTGATTTTGGACTTGCCAAATTATTAGGGGATGGAGAATCACATATTACAAC AATTGTTGCTGGAACATTTGGTTATCTAGCTCCCGAATACATGCAAAGTGGCAGGGCAACTGAAAAGACTGATGTTTATAGTTTTGGGGTCCTGGTGCTT GAAGTACTGAGCGGAAAGCGGCCAACGGATGCGTCATTCATTGAGAAGGGCCTGAACATTGTTGGTGGGCTAAATTTCTTGATCACAGAGAATAGACCAC GAGAAATTGTCGATCCAAACTGCGAGGGGGTGCAGGTAGAAAGCCTTGATGCCCTGCTTTCGGTTGCCACCCAATGTGTTTCTTCGAGCCCAGAGGATAG ACCCACCATGCACAGGGTGGTTCAAGTACTTGAATCTGAGGTTATGACCCCATGCCCAAGTGACTTTTACGATTCCAATTCTGATTGA
AA sequence Show only first row Show all	>Potri.003G105000.6 pacid=42786790 polypeptide=Potri.003G105000.6.p locus=Potri.003G105000 ID=Potri.003G105000.6.v4.1 annot-version=v4.1 MSICPMRFQRPWLLYILHLYILVNKSGAITPDGEALLSFRSAIVSSDGILPLWRPEDTDPCNWRGVTCDQKTKRVIYLNLKNHKLSGPISPDLGKLEHLR VLALYNNNFYGTIPSELGNCTELQGIFLQGNYLSGPIPSELGNLTVLQNLDISSNSLSGSIPSSLGKLNKLITFNVSNNFLIGPIPSDGVLINFADNSFT GNRDLCGKQINRTCRDDSGGSGTDGQPPSGQNQGGKKKYSGRLLISTSATIGALLLVALMCFWGCFLYKKFGKNESNSIAMDVSGGASIVMFHGDLPYSS KDIIKKLETLTEEHVIGSGGFGTVYKLEMDDGSIFALKRIVKMYDGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDFLSGGSLDEALHERSE QLDWDARLTIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVTDFGLAKLLGDGESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVL EVLSGKRPTDASFIEKGLNIVGGLNFLITENRPREIVDPNCEGVQVESLDALLSVATQCVSSSPEDRPTMHRVVQVLESEVMTPCPSDFYDSNSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.003G105000 [exp]	0	1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242200 [exp]	2.44	0.8203
AT1G51580			RNA-binding KH domain-containi...		Potri.010G251700 [exp]	4.47	0.7890
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	7.48	0.7768
AT5G61820			unknown protein		Potri.012G110300 [exp]	11.22	0.7813
AT5G15270			RNA-binding KH domain-containi...		Potri.004G123400 [exp]	16.43	0.7858
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	21.84	0.7720
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	24.18	0.7540	MYB111.1,MYB023
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	24.67	0.7221
AT3G20420		RTL2, ATRTL2	RNASEIII-LIKE 2, RNAse THREE-l...		Potri.011G086700 [exp]	24.81	0.6768
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	29.44	0.6940

Compare expression of checked genes

Potri.003G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.