Plant FIBer expression Database

Potri.003G105100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31410 584 / 0 putrescine-binding periplasmic protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033291
[exp]
627 / 0 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Lus10034754
[exp]
189 / 6e-56 AT1G31410 187 / 6e-56 putrescine-binding periplasmic protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0177 PBP PF13343 SBP_bac_6 Bacterial extracellular solute-binding protein
Representative CDS sequence
>Potri.003G105100.1 pacid=42784842 polypeptide=Potri.003G105100.1.p locus=Potri.003G105100 ID=Potri.003G105100.1.v4.1 annot-version=v4.1
ATGTCGTTCCTCTGCACTACGAATCTCTCTCTACACCCCCATCCTCAATTTCTATATCCTAACCCTAACCCTAAATCCCCAAAATTTCTCCTCCAGTTCC
CCGCAAAGCCCCCAATCCTCAGATTCTCCGGCCACCGGACCATCTCATTCCGTTCCCCGGCGAGACCAACAACATCCAGCCAGCATCCTTTCACATGGCT
TCAAATCGCAGCCACCTCCGCCGTTCTCTTCTTCGGCCTCAATGTCCAGGCCTGCCTTGCAGCCTCCTCTCCTTCACTCCCTGCTAACACCATCGTAGCA
GCACAGGAGGAAAGTACAGTAGATCAAGACGATGATGGTGGTGTAGAGAGAAATGTTGATAATGTGCAAATGAATGAAGATAAGGAATTGAATGCTGCTG
AATTTGAGAATTGGAAGTTGAAAACTTTCGCGTTGTCTGTTCCTCTTAGAATTGTTGCTTTGCGTGGCTCTGTACCTCCTTCATGGATCAAGGATTTTAT
TCAGTCTCAAGGAAGAAGATTGAGGTTTCGTGTGAAGTACCTTGGAAGCTTGGAAAACATTTTTTCTGACATATCTGCGTCCTTTAACAAACGTAATATC
GGTCCCATGTCAACTGTGGCTTCTGATATTGTTAGTGTTGGTGATTCTTGGCTCAGTTTTGCAATTAAAAATGCTATAATTGAGCCTGTGAGAGGGGTAG
AAGAGCAAGATTGGTTTAAAGGCTTAAGTGACAAATGGAAGGTATACCTGCGCAGGAACCATGAGGGAGAAATAGATCCCGAAGGTGAAATATGGGCTGC
ACCATATCGATGGGGCAGCATGGTTATCGCCTACAAGAAAAGTAAATTTCAAGAGCATAAATTGGCTCCTATAGAGGATTGGGCAGATCTGTGGCGGCCT
GAGCTTGCAGGGAGGATTTCAATGGTTGATTCTCCTAGAGAAGTTGTTGGTTCAGTTTTAAAGTATATGGGGGCATCGTACAATACAAAGAATATTGATT
TGCAAGTTCCTGGTGGGAAGAATGCTGTCCAGCAGAATCTGGCATTGCTTGGGAAACAGGTTCGACTATTCGACAGTATGTACTATCTGAAAACATTTAG
CATGGGAGATGCATGGGTTGCTGTTGGGTGGAGTAGTGATGTTCTTCCCATTGCCAAACGCATGTCTAATGTTGCAGTTGTAGTCCCCAAGTCTGGAACT
AGCTTATGGGCTGATCTATGGGCAATCCCAGCTGCCACTAAACTTGAAACAAACCAGATCGGGGGGCGAATCAGGGGACCATCTCCTCTAATCCATCAAT
GGATAGAGTTCTGCTTACAAGCTGCTAGAGCACTGCCTTTTAAGCAGGAGGTAATCCCGGGTGCAACTCCCTCTGCCATCGAAAACTCTGTCATTGAAGT
CCCAAAAGAGCTTACCAAGGGTAAGCCAAAACTGGACACGAATCTTATTGCTGGAGTACCCCCACCTGAAATCTTGACTAAGTGTGAGTTCTTGGAGCCA
TTGCCTGATGCAACTTTGTCAGACTATAAGTTGCTTATCCGTACTATGCAGATTCCTGATCCTGGTTTAATCCACAGAATACAGCATTATATCTTGTCAA
CAATTCATACTTTTAGATTAAAGCAGCATCCAAAGGTAGCATAA
AA sequence
>Potri.003G105100.1 pacid=42784842 polypeptide=Potri.003G105100.1.p locus=Potri.003G105100 ID=Potri.003G105100.1.v4.1 annot-version=v4.1
MSFLCTTNLSLHPHPQFLYPNPNPKSPKFLLQFPAKPPILRFSGHRTISFRSPARPTTSSQHPFTWLQIAATSAVLFFGLNVQACLAASSPSLPANTIVA
AQEESTVDQDDDGGVERNVDNVQMNEDKELNAAEFENWKLKTFALSVPLRIVALRGSVPPSWIKDFIQSQGRRLRFRVKYLGSLENIFSDISASFNKRNI
GPMSTVASDIVSVGDSWLSFAIKNAIIEPVRGVEEQDWFKGLSDKWKVYLRRNHEGEIDPEGEIWAAPYRWGSMVIAYKKSKFQEHKLAPIEDWADLWRP
ELAGRISMVDSPREVVGSVLKYMGASYNTKNIDLQVPGGKNAVQQNLALLGKQVRLFDSMYYLKTFSMGDAWVAVGWSSDVLPIAKRMSNVAVVVPKSGT
SLWADLWAIPAATKLETNQIGGRIRGPSPLIHQWIEFCLQAARALPFKQEVIPGATPSAIENSVIEVPKELTKGKPKLDTNLIAGVPPPEILTKCEFLEP
LPDATLSDYKLLIRTMQIPDPGLIHRIQHYILSTIHTFRLKQHPKVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31410 putrescine-binding periplasmic... Potri.003G105100
[exp]
0 1
AT5G19210 P-loop containing nucleoside t... Potri.010G092200
[exp]
1.00 0.8777
AT2G47350 HIT zinc finger ;PAPA-1-like c... Potri.013G008300
[exp]
4.69 0.8718
AT3G57710 Protein kinase superfamily pro... Potri.005G068000
[exp]
4.89 0.8549
Potri.014G049100
[exp]
6.00 0.8712
AT2G39190 ATATH8 Protein kinase superfamily pro... Potri.010G221000
[exp]
10.58 0.8576
AT4G29790 unknown protein Potri.006G146700
[exp]
11.40 0.8542
AT2G38570 unknown protein Potri.006G109500
[exp]
14.45 0.8530
AT1G77850 ARF ARF17 auxin response factor 17 (.1) Potri.002G089900
[exp]
14.49 0.8478
AT5G24870 RING/U-box superfamily protein... Potri.006G274700
[exp]
16.43 0.8188
AT5G20260 Exostosin family protein (.1) Potri.006G064800
[exp]
16.61 0.8527

Potri.003G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.