Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35615 414 / 3e-142 Eukaryotic aspartyl protease family protein (.1) AT1G64830 410 / 5e-141 Eukaryotic aspartyl protease family protein (.1) AT1G31450 409 / 3e-140 Eukaryotic aspartyl protease family protein (.1) AT5G33340 402 / 8e-138 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G03200 226 / 5e-69 Eukaryotic aspartyl protease family protein (.1) AT2G28010 224 / 5e-69 Eukaryotic aspartyl protease family protein (.1) AT2G28040 212 / 2e-64 Eukaryotic aspartyl protease family protein (.1) AT2G28030 199 / 3e-59 Eukaryotic aspartyl protease family protein (.1) AT3G59080 190 / 1e-54 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 186 / 1e-53 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 390 / 6e-133 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 383 / 2e-130 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 207 / 3e-62 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 204 / 9e-61 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 194 / 1e-56 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 189 / 4e-54 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G099400 [exp] 187 / 4e-54 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 182 / 5e-52 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 168 / 8e-47 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037254 [exp] 416 / 6e-143 AT2G35615 392 / 1e-133 Eukaryotic aspartyl protease family protein (.1) Lus10035668 [exp] 398 / 1e-135 AT2G35615 385 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 364 / 8e-123 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 357 / 7e-120 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 357 / 1e-119 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 356 / 1e-119 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 356 / 2e-119 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 353 / 2e-118 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 347 / 3e-116 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 336 / 2e-111 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.003G105300.1 pacid=42784782 polypeptide=Potri.003G105300.1.p locus=Potri.003G105300 ID=Potri.003G105300.1.v4.1 annot-version=v4.1 ATGGCCACCACCAGTTTCGGTTTCGTCACCATTGTCATATGTTTCATTAGTCTATCGCCATTTCCACTCTTAGGCGCAGCAGCCAGCCCTGATCCAGGGT TCAGTCTAAATCTTATTCATCGTGATTCTCCTCTTTCCCCACTTTACAACCCAAATCATACCGATTTCGATCGCTTGCGCAACGCTTTTTCTCGTTCCAT ATCACGTGTCAATGTCTTCAAGACTAAGGCAGTTGATATAAATTCATTCCAAAATGACTTGGTACCAAATGGTGGTGAATACTTCATGAAAATGTCCATT GGAACACCATTAGTTGAGGTAATTGTAATAGCTGATACCGGTAGTGACCTAACATGGGTTCAGTGTCTGCCTTGCGATCCATGTTACAGGCAAAAATCTC CTCTCTTCGATCCATCACGATCTTCATCATATCGTCACATGTTATGTGGGAGTCGGTTTTGCAATGCATTGGATGTTTCTGAGCAAGCTTGTGCCATGGA TACAAATATCTGTGAGTATCATTACTCATATGGAGACAAGTCATACACTAATGGGAATCTTGCTACTGAGAAGTTTACCATTGGCTCCACTAGCAGCCGT CCAGTTCACCTATCACCAATTGTGTTTGGCTGCGGTACTGGAAATGGTGGCACGTTCGATGAGCTAGGTTCTGGCATAGTTGGCCTCGGTGGTGGCGCTC TTTCCCTAGTGTCACAACTGAGTTCAATAATTAAAGGCAAGTTCTCATACTGTTTGGTGCCATTATCTGAACAATCGAATGTTACAAGCAAGATCAAATT TGGCACTGATAGCGTCATTTCCGGCCCCCAGGTGGTTTCCACTCCTTTGGTTTCTAAACAACCTGATACCTACTATTACGTAACACTAGAGGCCATTAGT GTCGGAAACAAGAGATTGCCTTATACTAATGGTTTGTTAAATGGTGATGTTGAAGAGGGTAACGTCATCATCGATTCAGGCACCACCTTAACTTTTCTTG ATTCTGAATTCTTCACCGAATTAGAAAGAGTGTTGGAGGAAACAGTGAAGGCAGAACGTGTTAGCGACCCCAGAGGGCTTTTCAGCGTTTGTTTCAGAAG TGCAGGTGATATTGATCTTCCTGTCATCGCAGTTCATTTCACTGATGCGGATGTGAAGTTGCAGCCACTGAATACATTTGTCAAAGCTGATGAGGATTTA CTATGCTTCACTATGATATCATCCAATCAAATAGGAATATTTGGGAACCTGGCTCAAATGGATTTTCTAGTAGGCTACGACCTTGAGAAGAGGACAGTGT CCTTCGAACCCACTGATTGCACCAAGCACTAG
AA sequence Show only first row Show all	>Potri.003G105300.1 pacid=42784782 polypeptide=Potri.003G105300.1.p locus=Potri.003G105300 ID=Potri.003G105300.1.v4.1 annot-version=v4.1 MATTSFGFVTIVICFISLSPFPLLGAAASPDPGFSLNLIHRDSPLSPLYNPNHTDFDRLRNAFSRSISRVNVFKTKAVDINSFQNDLVPNGGEYFMKMSI GTPLVEVIVIADTGSDLTWVQCLPCDPCYRQKSPLFDPSRSSSYRHMLCGSRFCNALDVSEQACAMDTNICEYHYSYGDKSYTNGNLATEKFTIGSTSSR PVHLSPIVFGCGTGNGGTFDELGSGIVGLGGGALSLVSQLSSIIKGKFSYCLVPLSEQSNVTSKIKFGTDSVISGPQVVSTPLVSKQPDTYYYVTLEAIS VGNKRLPYTNGLLNGDVEEGNVIIDSGTTLTFLDSEFFTELERVLEETVKAERVSDPRGLFSVCFRSAGDIDLPVIAVHFTDADVKLQPLNTFVKADEDL LCFTMISSNQIGIFGNLAQMDFLVGYDLEKRTVSFEPTDCTKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	0	1
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	5.09	0.8826
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	6.24	0.8826	FUCT3.1
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	8.06	0.8826
					Potri.010G007833 [exp]	10.19	0.8469
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028901 [exp]	12.84	0.7532
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	13.85	0.8025
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007811 [exp]	14.00	0.7751
					Potri.019G002628 [exp]	18.76	0.8057
AT5G36930			Disease resistance protein (TI...		Potri.019G000657 [exp]	21.44	0.7134
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.002G015800 [exp]	22.75	0.5627

Compare expression of checked genes

Potri.003G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.