Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61590 597 / 0 Protein kinase superfamily protein (.1) AT2G05940 432 / 1e-149 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G01020 414 / 5e-143 Protein kinase superfamily protein (.1) AT2G26290 400 / 2e-137 ARSK1 root-specific kinase 1 (.1) AT5G35580 400 / 1e-136 Protein kinase superfamily protein (.1) AT5G15080 380 / 2e-128 Protein kinase superfamily protein (.1) AT3G28690 373 / 2e-127 Protein kinase superfamily protein (.1.2.3) AT5G02290 365 / 2e-124 NAK Protein kinase superfamily protein (.1.2) AT3G01300 367 / 1e-123 Protein kinase superfamily protein (.1) AT5G56460 357 / 5e-121 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128500 [exp] 719 / 0 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 438 / 8e-152 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 433 / 4e-150 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 416 / 2e-143 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 414 / 8e-143 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 399 / 1e-136 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 398 / 2e-136 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 381 / 3e-129 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 379 / 2e-128 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034757 [exp] 608 / 0 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 570 / 0 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 435 / 6e-150 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 431 / 3e-148 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 407 / 1e-139 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10036762 [exp] 407 / 2e-139 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10011930 [exp] 406 / 3e-139 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 398 / 2e-136 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 398 / 4e-136 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10038087 [exp] 373 / 1e-126 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G105400.1 pacid=42785773 polypeptide=Potri.003G105400.1.p locus=Potri.003G105400 ID=Potri.003G105400.1.v4.1 annot-version=v4.1 ATGAGAGAATCCTCAAAGCCATGGAGACCATTCACAGCTAATTGCTGTTCAGTCGAGGATCAAGCATTCTTTGGCAACTATAGCAGATGTAGGACATCAA AATCAGACGTTTCCAAGAGCATTGCTCCATTGCCATCGTTTAGAAGATTGTCATTCTCTGATCTTAGCCGTTCTTCATCAATTCGTATTAACGAGGATCT GGCACAGACTTTTGGGCCTGACTTGTTTGACTTTCAACTGAGTGAGTTACGTGCTATAACACACAACTTTTCTAGCAGTTTCTTGCTAGGAGAAGGTGGG TTTGGAACTGTGCATAAGGGTTATGTAGATGATAATTTGAGGCAAGGTTTGAAGGCTCAGGCCGTTGCTGTTAAGCTTCTGGACATGGAAGGCCTGCAAG GTCACCGTGAATGGCTGGCAGAAGTAATATTCTTGGGACAACTTAGGCACTCAAATTTAGTAAAACTGCTTGGCTATTGCTGCGAGGAAGAAGAACGACT TCTTGTTTATGAGTTTATGCCTCGAGGAAGCTTAGAAAATCACTTGTTCAAAAGGCTTTCAGTGTCCCTGCCATGGGGCACAAGGTTAAAGATAGCAACA GGAGCAGCTAAGGGCCTAGCCTTTCTGCATGGTGCTGAGAAGCCTGTCATATACCGTGACTTCAAAACTTCCAATGTGTTGCTAGATTCTGATTTTACGG CTAAATTATCAGATTTTGGGCTCGCAAAGATGGGACCTGAAGGATCAGAGACACATGTTACCACTCGAGTGATGGGTACCTATGGATACGCCGCCCCCGA ATATGTTTCAACAGGGCATTTGACAACCCAAAGTGATGTTTATAGCTTTGGAGTGGTCTTACTAGAGCTGCTTACGGGAAGGAGAGCAACAGATAGATCA AGACCGAAGAGTGAGCAAAACATCATTGACTGGGCAAAACCTTATCTGACTAGCAGCCGCAGGTTGCGCTGTATTATGGATCCAAGACTTGCAGGCCAGT ATTCTGTCAAGGGAGCAAAGCACATGGCCCTATTAGCGTTACAGTGCATAAGTTTGAACCCCAGAGACAGGCCCAAAATGCCATCTATTGTCGAAACTCT TGAAGCCCTCCAACATTACAAGGATATGGCTGTGTCTTGTGGGCAATGGCAAGCATCACCAAAATCCACTGCGAGAAATGGAGTTTCCCCCAGAGGAAGG TTGGAAAGTAGAGGTGCAAGTTATAGAAAATCAGCTCCAGTCACATCAAGAAAACGCAATTAA
AA sequence Show only first row Show all	>Potri.003G105400.1 pacid=42785773 polypeptide=Potri.003G105400.1.p locus=Potri.003G105400 ID=Potri.003G105400.1.v4.1 annot-version=v4.1 MRESSKPWRPFTANCCSVEDQAFFGNYSRCRTSKSDVSKSIAPLPSFRRLSFSDLSRSSSIRINEDLAQTFGPDLFDFQLSELRAITHNFSSSFLLGEGG FGTVHKGYVDDNLRQGLKAQAVAVKLLDMEGLQGHREWLAEVIFLGQLRHSNLVKLLGYCCEEEERLLVYEFMPRGSLENHLFKRLSVSLPWGTRLKIAT GAAKGLAFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSETHVTTRVMGTYGYAAPEYVSTGHLTTQSDVYSFGVVLLELLTGRRATDRS RPKSEQNIIDWAKPYLTSSRRLRCIMDPRLAGQYSVKGAKHMALLALQCISLNPRDRPKMPSIVETLEALQHYKDMAVSCGQWQASPKSTARNGVSPRGR LESRGASYRKSAPVTSRKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61590			Protein kinase superfamily pro...		Potri.003G105400 [exp]	0	1
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.005G150400 [exp]	1.41	0.9194
AT5G49690			UDP-Glycosyltransferase superf...		Potri.003G184400 [exp]	4.24	0.9171
AT2G47390			Prolyl oligopeptidase family p...		Potri.014G120600 [exp]	22.44	0.8829
AT4G33490			Eukaryotic aspartyl protease f...		Potri.005G069600 [exp]	24.12	0.9010
					Potri.005G239800 [exp]	25.23	0.8723
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	34.78	0.8975
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	37.22	0.8856
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	37.78	0.8943
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007400 [exp]	42.00	0.8649
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	44.00	0.8845

Compare expression of checked genes

Potri.003G105400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.