Plant FIBer expression Database

Potri.003G105450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G105450.1 pacid=42787199 polypeptide=Potri.003G105450.1.p locus=Potri.003G105450 ID=Potri.003G105450.1.v4.1 annot-version=v4.1
ATGTTAGTGCGTTTCCCACGCATCCTCCAAGACAAAGAGGATCCTTCTTGTGATGCTGACTTGTTCATGGGCAGTTCATATGATAGTTTGAAGAACACAT
TAACTCCATGTGCTCCCTTTTGTAATGTTGGAGCCTCCCTCCCCTCTCTTAGCCACCTTGTATCTTCTTCTACCATTGCTGCCGATAATTATTATGCACG
CCTGCTGGGTTCATTTGACCCGAAACTACATCATAATTACTTGCGGGCAGTCAACTTTGCTCGACGTATGTTAGGCAATCGACGAAAGAGGGATCAAATT
CTTTTACAAAAGTCAACCATTTTGGGTGGTTTGAAGTCGAAGCATTTCCTCTTAATTTTGACCGAAGCAAGCTAG
AA sequence
>Potri.003G105450.1 pacid=42787199 polypeptide=Potri.003G105450.1.p locus=Potri.003G105450 ID=Potri.003G105450.1.v4.1 annot-version=v4.1
MLVRFPRILQDKEDPSCDADLFMGSSYDSLKNTLTPCAPFCNVGASLPSLSHLVSSSTIAADNYYARLLGSFDPKLHHNYLRAVNFARRMLGNRRKRDQI
LLQKSTILGGLKSKHFLLILTEAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G105450
[exp]
0 1
AT1G76520 Auxin efflux carrier family pr... Potri.011G145700
[exp]
2.82 0.8125
AT2G37730 Protein of unknown function (D... Potri.016G101200
[exp]
3.16 0.8289
AT4G17970 ATALMT12, ALMT1... "aluminum-activated, malate tr... Potri.005G208500
[exp]
7.14 0.7998
AT4G27220 NB-ARC domain-containing disea... Potri.001G404800
[exp]
7.93 0.7743
AT5G58350 ZIK2, WNK4 with no lysine (K) kinase 4 (.... Potri.019G128600
[exp]
8.83 0.7819
AT4G20140 GSO1 GASSHO1, Leucine-rich repeat t... Potri.012G088900
[exp]
9.16 0.7710
AT3G11760 unknown protein Potri.008G015700
[exp]
10.95 0.7971
AT1G03055 unknown protein Potri.005G216400
[exp]
11.53 0.7766
AT5G06570 alpha/beta-Hydrolases superfam... Potri.016G065000
[exp]
12.40 0.7724
AT4G06744 Leucine-rich repeat (LRR) fami... Potri.009G098700
[exp]
13.96 0.7682

Potri.003G105450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.