Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19460 665 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G73160 444 / 7e-153 UDP-Glycosyltransferase superfamily protein (.1) AT5G59070 377 / 2e-126 UDP-Glycosyltransferase superfamily protein (.1) AT3G45100 47 / 1e-05 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128300 [exp] 897 / 0 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097000 [exp] 451 / 1e-155 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G038400 [exp] 402 / 2e-136 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G130000 [exp] 55 / 9e-08 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034760 [exp] 681 / 0 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 645 / 0 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10032187 [exp] 471 / 4e-163 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 466 / 3e-161 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016475 [exp] 417 / 5e-142 AT5G59070 602 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040757 [exp] 413 / 1e-137 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024892 [exp] 54 / 2e-07 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF13439 [poplar] [flax] Glyco_transf_4 Glycosyltransferase Family 4
Representative CDS sequence Show only first row Show all	>Potri.003G105500.1 pacid=42785959 polypeptide=Potri.003G105500.1.p locus=Potri.003G105500 ID=Potri.003G105500.1.v4.1 annot-version=v4.1 ATGGCCTTCAACAGCAAACCCAAGAAACCTCATGCCATCCCTTCTCAATCTAAATCCAGTCTATGCACCACGCTTTTCTTCATTGTTCTCTTCACCATCC CTGCCCTTTTTCTCCTCCATGCCCCAACCACCTCCATTTGCACCACCTTGATTGCCAACCATGCCAATAAGCCCTGGTCAGGTGATCTAAGAAACGCGGA CTTTGCATGGAACCGCCTTGCCTTCATTGAAAATAAACCCCCTCCGGTCAAGCTCAAGATTGCTGTTTTCTCTCGCAAATGGCCTGTTGGCACAACCCCT GGTGGCATGGAACGCCATGCCTACACTTTACACACCGCTCTAGCTCACCGCGGCCACCAAGTGCATATCTTCACCTCTCCTGTAGATGAAAATAACCCAT CTGTTTCTCATGGTAGTGCGATATCTTATCCACAAATTCATTTTCATGAAGGCGAGCCAGGCAAGTGGAGGTATAACAAGGCATGGGAGCAATTTGATGA GGAGAACCAACGTGAAAGACCATTTGATGTGGTTCACTCGGAGAGTGTGGCTTTGCCTCATTGGTTAGCTCGCAACGTTCAGAATCTTGCAGTTTCCTGG CATGGTATAGCTCTTGAAAGCTTACAATCAAGTATTTACCAGGACTTGACACGAAAACCAAAGGAGCCCATCTCTCCTGATTTTAATAGAAGTCTCCATG GTGTTGTCCCTAAAGTGCTTAATGAGATAAGGTTTTTCAAGAACTATGAACATCATGTTGCTATTAGTGATAGTTGCGGTGAGATGCTAAGGGATGTGTA TCAGATTCCTAGCAGAAGAGTTCATGTAATTGTCAATGGTGTAGATGAACATGGTTTTGGAGTAGATGTGAGATTAGGCCATGAGTTTAGGTCTAAAATT GGTGTCCCAATTAATGCTAGTTTAGTACTTGGTGTTGCTGGAAGACTAGTGAAAGATAAAGGGCATCCTCTTCTCTATGAAGCATTTTCCGAGTTCATGA CAAAACACCCTGATGTCTATTTAATTGTGGCAGGGTCTGGTCCCTGGCAGCAAAGATACAAAGAACTAGGCACTAGAGTCTTGGTTTTGGGATCTATGAG TCCATCTGCATTGAGGGCATTCTATAACTCGATTGATATCTTTGTGAATCCAACACTTAGGCCTCAAGGGCTTGATCTTACTCTCATGGAGGCAATGATG AGTGGAAAACCAGTTATGGCATCAAGATTTCCTAGTATTAAAGGTACTATTGTTGTTGATGATGAGTTTGGATTCATGTTTTCTCCAAACGTGGCGTCTT TACTGGAGGCATTGGAAGCTGCGGTGATGGAAGGATCAAGAAGACTAGCTCAAAGAGGGAAGGCGTGCCAACAGTATGCTGCTTCCATGTTCACTGCCAG TAAGATGGCTTTGGCATATGAAAGGTTATTTCTCTGTATCAAAAATGAAACATATTGTACTTATCATTAG
AA sequence Show only first row Show all	>Potri.003G105500.1 pacid=42785959 polypeptide=Potri.003G105500.1.p locus=Potri.003G105500 ID=Potri.003G105500.1.v4.1 annot-version=v4.1 MAFNSKPKKPHAIPSQSKSSLCTTLFFIVLFTIPALFLLHAPTTSICTTLIANHANKPWSGDLRNADFAWNRLAFIENKPPPVKLKIAVFSRKWPVGTTP GGMERHAYTLHTALAHRGHQVHIFTSPVDENNPSVSHGSAISYPQIHFHEGEPGKWRYNKAWEQFDEENQRERPFDVVHSESVALPHWLARNVQNLAVSW HGIALESLQSSIYQDLTRKPKEPISPDFNRSLHGVVPKVLNEIRFFKNYEHHVAISDSCGEMLRDVYQIPSRRVHVIVNGVDEHGFGVDVRLGHEFRSKI GVPINASLVLGVAGRLVKDKGHPLLYEAFSEFMTKHPDVYLIVAGSGPWQQRYKELGTRVLVLGSMSPSALRAFYNSIDIFVNPTLRPQGLDLTLMEAMM SGKPVMASRFPSIKGTIVVDDEFGFMFSPNVASLLEALEAAVMEGSRRLAQRGKACQQYAASMFTASKMALAYERLFLCIKNETYCTYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19460			UDP-Glycosyltransferase superf...		Potri.003G105500 [exp]	0	1
AT1G35710			Protein kinase family protein ...		Potri.002G258400 [exp]	1.41	0.9077
					Potri.005G040650 [exp]	2.00	0.8877
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	3.00	0.8784
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	5.29	0.8541
AT2G27430			ARM repeat superfamily protein...		Potri.011G065300 [exp]	6.92	0.8534
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	8.12	0.8549
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	12.72	0.8398
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.002G203500 [exp]	14.49	0.8430
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	17.54	0.7902
AT5G60700			glycosyltransferase family pro...		Potri.009G010900 [exp]	18.65	0.8649

Compare expression of checked genes

Potri.003G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.