Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19450 735 / 0 Major facilitator superfamily protein (.1) AT5G45275 725 / 0 Major facilitator superfamily protein (.1) AT1G31470 546 / 0 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 496 / 3e-171 Major facilitator superfamily protein (.1) AT4G34950 201 / 3e-57 Major facilitator superfamily protein (.1) AT2G30300 152 / 7e-40 Major facilitator superfamily protein (.1) AT2G16660 108 / 1e-24 Major facilitator superfamily protein (.1) AT1G80530 107 / 3e-24 Major facilitator superfamily protein (.1) AT1G74780 90 / 9e-19 Nodulin-like / Major Facilitator Superfamily protein (.1) AT5G50630 84 / 9e-17 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128200 [exp] 904 / 0 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 208 / 5e-60 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 199 / 2e-56 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 166 / 1e-44 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 148 / 2e-38 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 141 / 6e-36 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 127 / 5e-31 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 125 / 2e-30 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 115 / 4e-27 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034738 [exp] 671 / 0 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033271 [exp] 478 / 2e-166 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10026422 [exp] 258 / 2e-78 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10033270 [exp] 167 / 2e-49 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10015470 [exp] 157 / 2e-41 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10015469 [exp] 146 / 1e-37 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10034491 [exp] 115 / 4e-27 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 113 / 3e-26 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10030111 [exp] 108 / 3e-26 AT1G80530 259 / 5e-83 Major facilitator superfamily protein (.1) Lus10025053 [exp] 112 / 4e-26 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.003G105600.1 pacid=42784702 polypeptide=Potri.003G105600.1.p locus=Potri.003G105600 ID=Potri.003G105600.1.v4.1 annot-version=v4.1 ATGGCAGGAGAGTCAAGGAAATGGATGATATTGGTGGCAACTATATGGATCCAAGCATTTACAGGGACAAATTTTGATTTCTCTGCTTATTCATCGGATT TAAAATCCGTTCTTGGGATTTCTCAGGTGCAACTGAACTACTTGGCTGTGGCCTCTGATCTTGGAAAAGTTTTTGGATGGTCTTCAGGATTAGCTCTCAT GTATTTTCCATTATGGGTGGTTCTTTTCATGGCTGCTTTCATGGGGTTCTTCAGTTATGGTCTTCAATGGCTTGTTATAAGGAACGTAATCTCTCTGCCT TACATCCTGGTGTTTCTTCTTTGTCTGTTGGCTGGATGCAGTATTTGTTGGTTCAACACTGTATGCTTTGTCCTTTGCATAAAAAATTTCTCTGCTAACC GGCCCCTAGCTTTATCCCTCACGATAGCCTTCAACGGTGTGAGTGCAGCCCTATACACTCTCGCTGGCAATGCAATAGGTTCATCATCAAATGCGATATA TCTTCTTTTAAATGCTTCTATTCCCCTCATCTCTTCCATTGCAGCATTGATCCCAATTCTTCGTCAACCATCTTTAGACCCCCTTCCTCCAGATGGAGTC CGCCGTGATTCCATTATATTTCTCATATTGAATTTCTTATCCATCCTCACGGGAATTTATCTTCTTCTCTTTGGTTCAAATTCGTCTGATGAAACAAGAG CTCGTCTTCTCTTTGGTGGAGCAATTTTTCTACTAATTTTCCCATTATGTATCCCTGGTATTGTCTATGCTAGAGAATGGTTTCACCGGACCATCCATTC TAGTTTCAGCCTTCATGGCTCTGGCTTCATGCTTGTGGATGTTGAAGATCTTGAGCTTCACAAAGAGCTACTTACCCGTGAGGCAAGTTATCATGAAAAT GAAACTGTGTATGGAAATACAAGACAGAAAAGCGGTGGTGAAAAAGATGGGTGCTGTGATACAATGGTTAAGAAAGATCGATTAGAAATGCTTGGGGAAG AGCACCCTGCGTGGTTGCTGGTACGCAGGCTGGATTTTTGGCTATATTACATTGCGTATTTCTGTGGGGGAACCATTGGCCTTGTATACAGCAACAATTT AGGCCAAATAGCAGAGTCGGTCGGACAAAGTTCAAACACTACAACTCTTGTAACTCTCTATTCATCCTTCTCCTTTTTCGGCCGCTTGCTTTCGGCAGCA CCAGACTACATTCGCGCGAAGATCTACTTTGCAAGGACTGGATGGCTTACCATTGCCCTTGTGCCAACCCCAATAGCCTTCTTCTTGCTTGCTGCGTCAG GCAATGGTCTGGCATTACATATAGGCACTGCATTAGTTGGATTGAGCTCTGGATTCATCTTTGCCGCTGCAGTTTCAATAACATCTGAGCTATTTGGGCC TAATAGCATTGGCGTCAATCACAACATTCTTATCACAAATATCCCATTAGGGTCACTTGTTTATGGTGTTCTAGCAGCTGTAGTATATGATTCCCATGCA AGCTCTAGCCTAAACATCATTACTGACTCGGCAGTTTGCATGGGAAGGCAATGCTATTACTTAACGTTTTTGTGGTGGGGATGCCTATCGGTGTTGGGCT TAACTTCTAGTTTGTTGTTATTCTTGAGGACCAGACATGCCTATGATCAGTTCGAAGTTAAACGTATTTCTACGTCACTACTGTATTAA
AA sequence Show only first row Show all	>Potri.003G105600.1 pacid=42784702 polypeptide=Potri.003G105600.1.p locus=Potri.003G105600 ID=Potri.003G105600.1.v4.1 annot-version=v4.1 MAGESRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGISQVQLNYLAVASDLGKVFGWSSGLALMYFPLWVVLFMAAFMGFFSYGLQWLVIRNVISLP YILVFLLCLLAGCSICWFNTVCFVLCIKNFSANRPLALSLTIAFNGVSAALYTLAGNAIGSSSNAIYLLLNASIPLISSIAALIPILRQPSLDPLPPDGV RRDSIIFLILNFLSILTGIYLLLFGSNSSDETRARLLFGGAIFLLIFPLCIPGIVYAREWFHRTIHSSFSLHGSGFMLVDVEDLELHKELLTREASYHEN ETVYGNTRQKSGGEKDGCCDTMVKKDRLEMLGEEHPAWLLVRRLDFWLYYIAYFCGGTIGLVYSNNLGQIAESVGQSSNTTTLVTLYSSFSFFGRLLSAA PDYIRAKIYFARTGWLTIALVPTPIAFFLLAASGNGLALHIGTALVGLSSGFIFAAAVSITSELFGPNSIGVNHNILITNIPLGSLVYGVLAAVVYDSHA SSSLNIITDSAVCMGRQCYYLTFLWWGCLSVLGLTSSLLLFLRTRHAYDQFEVKRISTSLLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19450			Major facilitator superfamily ...		Potri.003G105600 [exp]	0	1
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	9.89	0.7056
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	13.67	0.6681
AT5G65170			VQ motif-containing protein (....		Potri.005G166100 [exp]	19.18	0.6735
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437400 [exp]	26.22	0.6533
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	43.40	0.6623
AT5G54830			DOMON domain-containing protei...		Potri.018G021000 [exp]	47.11	0.6116
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.011G107600 [exp]	51.38	0.6344
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.002G045800 [exp]	65.84	0.6049
					Potri.001G054850 [exp]	71.84	0.6378
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	87.36	0.6124

Compare expression of checked genes

Potri.003G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.