Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19440 758 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G59900 338 / 1e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 315 / 3e-95 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 309 / 2e-94 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 313 / 4e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 303 / 3e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 302 / 6e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 298 / 7e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 308 / 4e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 297 / 6e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236800 [exp] 359 / 3e-110 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 355 / 1e-108 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 350 / 5e-106 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 328 / 9e-101 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 324 / 8e-99 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 324 / 1e-98 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 311 / 4e-94 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 309 / 6e-94 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 309 / 3e-92 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036020 [exp] 358 / 8e-111 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 342 / 8e-104 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 334 / 5e-101 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 321 / 1e-97 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010407 [exp] 323 / 5e-97 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 324 / 8e-97 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 311 / 4e-93 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 302 / 7e-91 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008650 [exp] 304 / 9e-91 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042529 [exp] 309 / 1e-90 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G105700.1 pacid=42785978 polypeptide=Potri.003G105700.1.p locus=Potri.003G105700 ID=Potri.003G105700.1.v4.1 annot-version=v4.1 ATGCAATCTCTAATGGATATGAGAAGGCTAACGATCACCAAACCCATCTTTATTCAATCCCCGCTTAAACGTCCTTTAACTTGTATCACAACCACGCTTC AAAAACAGCACCAAATACACCCACAAGCTCCTCCTCCTCCTCCATTATTGCAGACACAGACAAATCCACAAGCTTTAAATCAGAGTTTACTCAAAAGGGT GTCTTTAATTCTCTCTAATCCATCTTTGGATTGCGCTAAATGTAAAGAATTAGTCCCCCATTTGTCTCCTCAAGAGTTTGATAGCTGTTTCTTAGCTCTT AAATCAAATGTGAATCCAAAAACAGCTTTGAATTTCTTTCATTTTGTATCCGAGACTTGTAAGTTTCGTTTCACAGCTCGATCTTATTGTGTTTTGATTC ATTTGCTTGTTGGTAATGATCTTTTGTCTCCTGCAAGATTGCTTTTAATTCGTTTGATTGATGGGAAAGTTCCAGCCTTTTATGCGAGGAATTTTGAGAG TAGACATTTTGAGATTGCACAAATAATGGCTGATTTTAATTTGGTGTTTGAGCCTGTTATTGGGGTCAAAATTGCTGATTTATTGGTACATGTGTATAGT ACACAGTTTAAACATTTGGGTTTTGGTTTTGCTGCTGATGTCTTTAGTTTATTGGCGAAAAAGGGTTTGTTTCCCTCACTAAAGACATGCACTTTTCTGT TGAGTTCTTTAGTGAAGGCTAATGAGCTAAAAAAGAGCTATGAAGTGTATGATTTCATCTGTCTTGGTGGTATCATTCCGGATGTTCACTTGTTCAGCAC AATGATTAATGCGTTTTGTAAGGGACACAGAGAGGATGATGCTATCGGGTTGTTTTCAAAAATGGAAAAGTTGGGTGTTGCTCCAAATGTTGTTACGTAT AATAATATCATTCATGGCTTGTGTAAGAGTGGGAGATTAGATGAGGCATACAGGTTTAAAGAAAAGATGGTAAAAGAGAAAGTGAGTCCAAGCCTTATAA CATATAGTGTTTTCATTAATGGTTTGATTAAGTTGGAGAAAATTGATGAAGCAAATTGTGTTTTGAAGGAAATGTCTGAGTTGGGTTTTGTGCCAAATGA GGTTGTATATAACACATTGATTGATGGGTACTGTAAGATGGGAAATATTAGCGAAGCACTTAAAATAAGAGATGACATGTTATCGAAGGGGATATCTCCC AATTCAGTTACTTTGAATTCACTTATACAAGGTTTTTGCAAGAGTGATCAAATAGGACAAGCTGAAAATGTTTTAGAGGAGATGATAGGAAGAGGTTTAC CAATAAACCAAGGCTCATTTTCTATGGTGATTAATTGGTTGTGCTTGAAGTTTAGGTTTGTTACTGCACTACATTTTATTAGAGAGATGCTGTTAAGAAA TTTGAGGCCAAATGATGGGCTGCTTACCACATTGGTTAGTGGGTTATGTAAGGCTGGAAAGCAAGGAGAAGCAGTTGAACTTTGGTGTAGGTTGTTGGGG AAAGGTTTTGTACCCAACATAGTGACTTCAAATGCCCTTATTCATGGGCTGTGTAAAGCAGGAAACATGCAAGAAACTCTTAAGCTCCTCAGAGATATGC TAGAGAGGGGTTTAGTATTTGACAGGATAACGTACAACACGCTCATATCAGGGTGCTGTAAGGAGGGAAAAGTCAAGGAAGGATTTGAACTTAAGGAAGA GATGGTCAAGAAGGGAATTCAGCCAGACATATACACTTTTAATTTATTGCTACATGGGCTCTGTAATGCGGATAAGATTGATGAAGCCAGTAGGCTATGG CATGAGTGTAAAAAAAATGGTTATGTTCCTAATGTTTACACATATGGTGTTATGATTGATGGATACTGTAAAGCCAATAAAGTTGAAGAGGGTGAAAATC TATTAAACGAGTTAGTTTCCAAGAAACTGGAGCTAAATTCTGTTGTTTATAATTCTCTAATCAGAGCATACTGCATCAATGGGAATATGAATGCAGCATT TAGGCTTCGTGATGACATGAAAAGCAGAGGCGTCCTGCTAAGTTGTGCCACATATTCTTCTCTGATGCACGGACTGTGCAATATTGGCCTTGTTGATGAT GCAAAACACCTCCTTGATGAGATGAGAAAGGAGGGCTTGTTGCCAAATGTTGTCTGCTACACTACAATCATTGGTGGTTATAGTAAGCTAGGCCAGATGA ATAAAGTCAATATTGTCTTGCAAGAAATGTCTTCACATAATATACATCCTAATAAATTCACCTACACAATCATGATAGATGGGTTTTGCAAACTGGGCAA AACAAAAGAAGCAGCTAAGCTTCTGAACGAGATGACAGAAAAAGGAATTCTTCCTGATGCTGTCACTTACAATGCCTTCACAAATGGGTTATGCAAAGAA GGTAAGGTAGAAGAAGCATTTAAAGTATGTGATGAAATGTCCAGTGGAGCAGTATGTTTAGATGAGATTACATACACTACATTGATTGATGGGTGCCATC AGCCATCAACAGCCACAAATCAAGAATGA
AA sequence Show only first row Show all	>Potri.003G105700.1 pacid=42785978 polypeptide=Potri.003G105700.1.p locus=Potri.003G105700 ID=Potri.003G105700.1.v4.1 annot-version=v4.1 MQSLMDMRRLTITKPIFIQSPLKRPLTCITTTLQKQHQIHPQAPPPPPLLQTQTNPQALNQSLLKRVSLILSNPSLDCAKCKELVPHLSPQEFDSCFLAL KSNVNPKTALNFFHFVSETCKFRFTARSYCVLIHLLVGNDLLSPARLLLIRLIDGKVPAFYARNFESRHFEIAQIMADFNLVFEPVIGVKIADLLVHVYS TQFKHLGFGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTY NNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISP NSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLG KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLW HECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDD AKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKE GKVEEAFKVCDEMSSGAVCLDEITYTTLIDGCHQPSTATNQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	0	1
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	3.46	0.8767
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	3.74	0.8804
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	4.47	0.8513
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	7.07	0.8615
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	7.21	0.8642
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	9.64	0.8723
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	9.79	0.8200
AT1G65540			LETM1-like protein (.1)		Potri.008G078600 [exp]	10.67	0.8045
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	10.90	0.8326
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	12.48	0.8581

Compare expression of checked genes

Potri.003G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.