Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) AT1G31530 172 / 9e-51 DNAse I-like superfamily protein (.1) AT3G58560 100 / 9e-23 DNAse I-like superfamily protein (.1) AT5G11350 96 / 5e-21 DNAse I-like superfamily protein (.1) AT3G58580 94 / 1e-20 DNAse I-like superfamily protein (.1) AT3G18500 87 / 2e-18 DNAse I-like superfamily protein (.1.2.3) AT1G73875 81 / 2e-16 DNAse I-like superfamily protein (.1) AT1G02270 45 / 8e-05 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061700 [exp] 108 / 1e-25 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 105 / 2e-24 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 95 / 9e-21 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 73 / 9e-14 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026203 [exp] 471 / 1e-166 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10042463 [exp] 213 / 1e-66 AT1G31500 206 / 3e-64 DNAse I-like superfamily protein (.1.2.3.4) Lus10000006 [exp] 120 / 4e-33 AT1G31500 122 / 1e-35 DNAse I-like superfamily protein (.1.2.3.4) Lus10000005 [exp] 116 / 6e-32 AT1G31500 118 / 5e-34 DNAse I-like superfamily protein (.1.2.3.4) Lus10029338 [exp] 107 / 4e-25 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 107 / 7e-25 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 100 / 9e-23 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 100 / 2e-22 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 98 / 8e-22 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 96 / 5e-21 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.003G106000.1 pacid=42784502 polypeptide=Potri.003G106000.1.p locus=Potri.003G106000 ID=Potri.003G106000.1.v4.1 annot-version=v4.1 ATGCTAAAATCCCTCTCATCACTTACCCGCCTACCCATTCCACCTATATCCACCAGTTGTAGAATTTGTTCGAGCAAAATGAGCACAACAAAACCATCAC CAACATGCCCAAAATTTATTTCTGTTGAGGGAGATGACATTTACTCCAGAAGTAAACCTGATGGTGTTAGATTCAGTCTTGTCTCCTATAACATTTTGGC TCAGGTTTATGTGAAGAGTTCTATTTTCCCACACTCCCCGTCTCCTTGTCTCAAGTGGAAAGCTCGCTCCCAGGAAATTTTAACTGTTCTCAAGAACCTT GGGACTGACTTCCTCTGCCTACAGGAATTGGATGAGTATGATAGCTTTTACAAGAAAAATATTGAAAGTTATGGTTATTCCAGTATTTATATTCAGAGAA GTGGGCAGAAGCGTGATGGCTGTGGAATTTTTTATAAGCCCGACTGCGCAGATTTGCTGCTAGAGGAAAGAATAGAGTACAATGATCTTGTTGATTCAAT TCAAGATGTGTCAATTTTATGTGACGATAAACACAGTGATACCCAGGCAAATGGAGATGAAAATAGTGAACCGAAGAATGGTTCATCATCAAAAAGTACT CTTGAAGATCATGGAGATCCTAATGATCCTCGTGTAAGATTAAAGCGAGACTGTGTTGGAATTATGGCTGCTTTTAGACTCAAGAATACTCCCCATCATG TTATCGTGGCAAACACTCACATTTACTGGGACCCAGAATGGGCTGATGTCAAGCTTGCTCAAGCTAAATATCTTCTATCACGCGTAGCTCAATTCAAGGA ACTAGTTTCTGAAAAATATGAATGCGTGCCTTCAGTAATTCTTGCTGGCGACTTCAATTCAATCCCAGGGGATAAGGTTTATGAGTACCTTGTATCTGGC AGCTCTTCATCAGCTTCACTAGCGGAATGTTTGGATGAGCTTCCTATTCCGCTGTGCAGTGTCTATGGTAGTACAAGGGGAGAACCGCCGTTCACAAACT GCACGCCGGACTTCACCAATACGCTTGATTATATATTCTTTGTCCCTGACGATCAAATTAAACCGCTCAGTTTCCTTGAACTTCCTGAAGCAAACTCGCC TAATGTTCTTGGTGGCTTACCAAACTATTACCACCCAAGTGATCATCTACCGATTGGTGCTGAGTTTGAAATAACGAGGGAATAA
AA sequence Show only first row Show all	>Potri.003G106000.1 pacid=42784502 polypeptide=Potri.003G106000.1.p locus=Potri.003G106000 ID=Potri.003G106000.1.v4.1 annot-version=v4.1 MLKSLSSLTRLPIPPISTSCRICSSKMSTTKPSPTCPKFISVEGDDIYSRSKPDGVRFSLVSYNILAQVYVKSSIFPHSPSPCLKWKARSQEILTVLKNL GTDFLCLQELDEYDSFYKKNIESYGYSSIYIQRSGQKRDGCGIFYKPDCADLLLEERIEYNDLVDSIQDVSILCDDKHSDTQANGDENSEPKNGSSSKST LEDHGDPNDPRVRLKRDCVGIMAAFRLKNTPHHVIVANTHIYWDPEWADVKLAQAKYLLSRVAQFKELVSEKYECVPSVILAGDFNSIPGDKVYEYLVSG SSSSASLAECLDELPIPLCSVYGSTRGEPPFTNCTPDFTNTLDYIFFVPDDQIKPLSFLELPEANSPNVLGGLPNYYHPSDHLPIGAEFEITRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	0	1
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	2.82	0.7888
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	4.47	0.7801
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.009G048000 [exp]	7.54	0.7707
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Potri.005G180700 [exp]	15.65	0.7118	OGG1.1
ATCG00700		ATCG00700.1, PS...	photosystem II reaction center...		Potri.011G113700 [exp]	16.24	0.7298
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.002G097500 [exp]	16.73	0.7405	Pt-GRF10.2
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.005G060600 [exp]	17.14	0.7042
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	24.08	0.7163
ATCG00340		ATCG00340.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.013G142124 [exp]	25.45	0.7379
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.004G128501 [exp]	28.98	0.7203

Compare expression of checked genes

Potri.003G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.