Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17760 1037 / 0 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51110 62 / 9e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G24270 62 / 1e-09 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT1G04080 57 / 5e-08 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G13210 57 / 5e-08 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 49 / 2e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G41770 46 / 8e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G28740 44 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257100 [exp] 56 / 1e-07 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.003G137200 [exp] 51 / 2e-06 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.001G094400 [exp] 51 / 3e-06 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.014G192800 [exp] 48 / 3e-05 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G062600 [exp] 47 / 7e-05 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1) Potri.004G035600 [exp] 44 / 0.0005 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003684 [exp] 1093 / 0 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028994 [exp] 1072 / 0 AT1G17760 957 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022874 [exp] 67 / 3e-11 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10024952 [exp] 64 / 3e-10 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10005168 [exp] 52 / 2e-06 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Lus10034294 [exp] 47 / 8e-05 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 45 / 0.0003 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF05843 [poplar] [flax] Suf Suppressor of forked protein (Suf) CL0020 [poplar] [flax] TPR PF13428 [poplar] [flax] TPR_14 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.003G106200.1 pacid=42785355 polypeptide=Potri.003G106200.1.p locus=Potri.003G106200 ID=Potri.003G106200.1.v4.1 annot-version=v4.1 ATGGCATCTGTCGATAATGGAGCTCAATCTGAAACAAAGGATCAAGCAACAACAAGTACTACTGCTGCGACTGATCCATACAATGTCGAAGCTGCAGAAA TATTAGCTAGCAGCGCACAGCATATGCCGATTGCCCAAGCTGCACCGATATATGAGCAAATCCTTTCACTGTTTCCCACTGCCTCAAAATTTTGGAAACA ATATGCGGAGGCACATATGGCTGTGAATAATGATGATGCTATAAAACAGATATTTAGCCGGTGTTTATTGAATTGTCTTCATATTCCTCTTTGGCGATGC TACATTCGATTCATCAGAAAGGTCAATGAGAAGAAGGGTGCAGACGGGCAGGATGAAATAAGAAAAGCTTTTGACTTCATGCTTGGTTATGTTGGGGCAG ACATGGCATCTGGGCCTGTATGGATGGAATACATTACCTTTCTGAAGTCACTACCAGCTCAAACTGCACAGGAAGAGTCAATACGGATGACCGCTATACG TAAAACATACCAGAAAGCTATTATCACTCCTACCCATCATGTTGAACAACTCTGGAGAGAATATGAAAATTTTGAAAATTCTGTCAGCCGGCAATTGGCC AAAGGACTCGTATCTGAATATCAACCAAAATATAACAGTGCCAGGGCTGTCTATAGGGAGCAGAAGAAATATGTTGACGAAATTGATTATAATATGCTAG CTGTACCACCAACTGGATCTTTCAAGGAAGAACAACAATGGATGGCTTGGAAGAGATTTTTGACGTTTGAGAAAGGAAACCCCCAAAGGATAGACAGCGT GTCCTCCAACAAACGAATTATATTCACCTATGAGCAGTGTCTGATGTATTTGTATCATTATCAAGATGTATGGTATGACTATGCTACCTGGCATGCAAAA AGTGGCTCTATAGATTCTGCAATCAAAGTGTTTCAGAGGGCTTTGAAGGCTCTTCCAGATTCAGATACGCTGAAGTATGCTTATGCTGAGTTGGAGGAAT CTCGTGGAGCAATCCAGCCTGCAAGGAAAATCTACGAAAGCCTCTTGGGAGATGGTGTTAATGCAACAGCACTAGCTCATATACAGTTTATTCGCTTTCT AAGAAGGAATGAAGGAGTGGAAGCAGCTCGCAAGTACTTCTTAGATGCTCGGAAATCCCCAGACTGCTCTTATCATGTTTATGTTGCTTATGCTTTGATA GCATTTTGTCTGGACAAGGATTCAAAGATCGCGCACAATATTTTTGAAGCAGGATTGAAACGCTTCATGCATGAACCAGTGTACATTCTGGAATATGCAG ATTTCTTGTCCCGTTTGAATGATGAGAGAAACATTCGAGCTTTATTTGAGCGTGCATTAAGCTCGCTACCACCCGAGGAATCTGTTGAGGTCTGGAAACG ATATATCCAGTTTGAGCAAACATATGGTGATCTTGCCAGCATGTTGAAGGTCGAGCAAAGAAGAAAAGAAGCTCTTTCGAGGACAGGGGAAGATGGAGCA TCAGCATTAGAGAGTTCATTGCAGGATGTTGTGTCACGGTATAGTTTCATGGATCTTTGGCCATGCTCCTCTAAGGATTTGGATCACTTAGCTCGGCAAG AGTGGCTAGCTAAAAATATTAATAAGAAAGCAGAGAAGTCTGCTGTTTCTAATGGACCTGCGACTTTAGATAAGATTCCTGCTGGTCTGGCAAGTAATTC AAATGTATCTGGTAAAGTAATTTATCCAGATACCTCACAAACGGTAATTTATGACCCAAGGCAAAAGCTAGAGGCTGGAATTCCACCTAGCACAACAGCG TCTGGGTTCAAGGCTGCTTCTAACCCATTGTCGAATCCTATTGGATTGGCACCCAATGTATTTGATGAGGTGCTGAAAGCAACACCACCTGCATTGATAT CTTTTTTAGCAAACTTGCCCGTAGTTGAAGGTCCTGCACCAAATGTAGATATTGTATTATCAATTTGTTTGCAGAGTGACGTACCTGTTGGGAAAACAGG AAAGTCAGGGACAACCCAAACTCCAATGCTTTCTGGTCCTGCAACAAGTGATCTTTCTGGTTCGAGCAGATCACGTCCTGTCCCAAGCGGTTCATCTTTC AAAACACGGGATAGACAATCTGGGAAACGGAAGGACCGAGACAGGCAAGAAGAAGATGAAACGGCGACCGTCCAAAGCCAACCATTACCTAGAGATGTTT TCAGGATACGGCAGATTCAAAAATCGCGAGCTGCTGCTACCACTTCACAGACAGGGTCAGTATCATACGGAAGTGCTCTTTCAGGAGATCTGTCTGGTAG TACCACCTGA
AA sequence Show only first row Show all	>Potri.003G106200.1 pacid=42785355 polypeptide=Potri.003G106200.1.p locus=Potri.003G106200 ID=Potri.003G106200.1.v4.1 annot-version=v4.1 MASVDNGAQSETKDQATTSTTAATDPYNVEAAEILASSAQHMPIAQAAPIYEQILSLFPTASKFWKQYAEAHMAVNNDDAIKQIFSRCLLNCLHIPLWRC YIRFIRKVNEKKGADGQDEIRKAFDFMLGYVGADMASGPVWMEYITFLKSLPAQTAQEESIRMTAIRKTYQKAIITPTHHVEQLWREYENFENSVSRQLA KGLVSEYQPKYNSARAVYREQKKYVDEIDYNMLAVPPTGSFKEEQQWMAWKRFLTFEKGNPQRIDSVSSNKRIIFTYEQCLMYLYHYQDVWYDYATWHAK SGSIDSAIKVFQRALKALPDSDTLKYAYAELEESRGAIQPARKIYESLLGDGVNATALAHIQFIRFLRRNEGVEAARKYFLDARKSPDCSYHVYVAYALI AFCLDKDSKIAHNIFEAGLKRFMHEPVYILEYADFLSRLNDERNIRALFERALSSLPPEESVEVWKRYIQFEQTYGDLASMLKVEQRRKEALSRTGEDGA SALESSLQDVVSRYSFMDLWPCSSKDLDHLARQEWLAKNINKKAEKSAVSNGPATLDKIPAGLASNSNVSGKVIYPDTSQTVIYDPRQKLEAGIPPSTTA SGFKAASNPLSNPIGLAPNVFDEVLKATPPALISFLANLPVVEGPAPNVDIVLSICLQSDVPVGKTGKSGTTQTPMLSGPATSDLSGSSRSRPVPSGSSF KTRDRQSGKRKDRDRQEEDETATVQSQPLPRDVFRIRQIQKSRAAATTSQTGSVSYGSALSGDLSGSTT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.003G106200 [exp]	0	1
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	3.60	0.8566
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	12.48	0.8329
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Potri.008G073001 [exp]	14.38	0.8122
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	15.29	0.7965
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	17.02	0.8101	FCA.3
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.009G149600 [exp]	17.54	0.7912
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	17.54	0.8015
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	22.44	0.8155	MOM.2,1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	23.87	0.7789
AT5G07330			unknown protein		Potri.012G110900 [exp]	23.91	0.7208

Compare expression of checked genes

Potri.003G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.